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406 Reviews — GigaScience — All Subjects

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Construction of a new chromosome-scale, long-read reference genome assembly of the Syrian hamster, Mesocricetus auratus
Harris, R. A., Raveendran, M., Lyfoung, D. T., Sedlazeck, F. J., Mahmoud, M., Prall, T., Karl, J., Doddapaneni, H., Meng, Q., Han, Y., Muzny, D., Wiseman, R. W., O'Connor, D. H., Rogers, J.
10.1101/2021.07.05.451071 — Posted: 2021-07-05 — Discussion: 2023-02-15  GigaScience
Loop detection using Hi-C data with HiCExplorer
Wolff, J., Backofen, R., Gruening, B.
10.1101/2020.03.05.979096 — Posted: 2020-03-06 — Discussion: 2023-02-15  GigaScience
A chromosome-level reference genome of Ensete glaucum gives insight into diversity, chromosomal and repetitive sequence evolution in the Musaceae
Wang, Z., Rouard, M., Biswas, M. K., Droc, G., Cui, D., Roux, N., Baurens, F.-C., Ge, X.-J., Schwarzacher, T., Heslop-Harrison, J., Liu, Q.
10.1101/2021.11.23.469474 — Posted: 2021-11-24 — Discussion: 2023-02-15  GigaScience
Monash DaCRA fPET-fMRI: A DAtaset for Comparison of Radiotracer Administration for high temporal resolution functional FDG-PET
Jamadar, S. D., Liang, E. X., Zhong, S., Ward, P. G., Carey, A., McIntyre, R., Chen, Z., Egan, G. D.
10.1101/2021.08.02.454708 — Posted: 2021-08-03 — Discussion: 2023-02-14  GigaScience
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves higher resolution for research and breeding
Aury, J.-M., Engelen, S., Istace, B., Monat, C., Lasserre-Zuber, P., Belser, C., Cruaud, C., Rimbert, H., Leroy, P., Arribat, S., Dufau, I., Bellec, A., Grimbichler, D., Papon, N., Paux, E., Ranoux, M., Alberti, A., Wincker, P., Choulet, F.
10.1101/2021.08.24.457458 — Posted: 2021-08-24 — Discussion: 2022-11-27  GigaScience
Message in a Bottle, Metabarcoding Enables Biodiversity Comparisons Across Ecoregions
Steinke, D., deWaard, S. L., Sones, J. E., Ivanova, N. V., Prosser, S. W., Perez, K., Braukmann, T. W. A., Milton, M., Zakharov, E., deWaard, J. R., Ratnasingham, S., Hebert, P. D. N.
10.1101/2021.07.05.451165 — Posted: 2021-07-06 — Discussion: 2022-10-10  GigaScience
Tourmaline: a workflow for rapid and reproducible amplicon sequence analysis using QIIME 2 and Snakemake
Thompson, L. R., Anderson, S. R., Den Uyl, P. A., Patin, N. V., Sanderson, G., Goodwin, K. D.
10.1101/2021.09.15.460495 — Posted: 2021-09-17 — Discussion: 2022-09-05  GigaScience
Improving the annotation of the Heterorhabditis bacteriophora genome
McLean, F., Berger, D., Laetsch, D., Schwartz, H., Blaxter, M.
10.1101/225904 — Posted: 2017-11-30 — Discussion: 2022-08-09  GigaScience
Standardized genome-wide function prediction enables comparative functional genomics in plants: a new application area for Gene Ontologies
Fattel, L., Psaroudakis, D., Yanarella, C., Chiteri, K., Dostalik, H. A., Joshi, P., Starr, D. C., Vu, H., Wimalanathan, K., Lawrence-Dill, C. J.
10.1101/2021.04.25.441366 — Posted: 2021-04-28 — Discussion: 2022-08-09  GigaScience
Predicting plant biomass accumulation from image-derived parameters
Dijun Chen, Rongli Shi, Jean-Michel Pape, Christian Klukas
10.1101/046656 — Posted: 2016-03-31 — Discussion: 2022-06-23  GigaScience

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