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418 Reviews — GigaScience — All Subjects

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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
Sarwal, V., Brito, J., Mangul, S., Koslicki, D. J.
10.1101/2022.04.28.489926 — Posted: 2022-04-29 — Discussion: 2023-03-05  GigaScience
xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments
Farek, J., Hughes, D., Mansfield, A., Krasheninina, O., Nasser, W., Sedlazeck, F. J., Khan, Z., Venner, E., Metcalf, G., Boerwinkle, E., Muzny, D. M., Gibbs, R. A., Salerno, W.
10.1101/295071 — Posted: 2018-04-05 — Discussion: 2023-03-04  GigaScience
Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex-predation
Shukla, H., Suryamohan, K., Khan, A., Mohan, K., Perumal, R., Mathew, O., Menon, R., Dixon, M. D., Muraleedharan, M., Kuriakose, B., Michael, S., Krishnakutty, S., Zachariah, A., Seshagiri, S., Ramakrishnan, U.
10.1101/2022.05.14.491975 — Posted: 2022-05-17 — Discussion: 2023-03-04  GigaScience
Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
Miller, J., Zimin, A., Gordus, A. G.
10.1101/2022.06.14.495972 — Posted: 2022-06-16 — Discussion: 2023-03-04  GigaScience
Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation
Avila Cartes, J., Anand, S., Ciccolella, S., Bonizzoni, P., Della Vedova, G.
10.1101/2022.06.13.495912 — Posted: 2022-06-13 — Discussion: 2023-03-04  GigaScience
A molecular phenotypic map of Malignant Pleural Mesothelioma
Di Genova, A., Mangiante, L., Sexton-Oates, A., Voegele, C., Fernandez-Cuesta, L., Alcala, N., Foll, M.
10.1101/2022.07.06.499003 — Posted: 2022-07-08 — Discussion: 2023-03-04  GigaScience
scShapes: A statistical framework for identifying distribution shapes in single-cell RNA-sequencing data
Dharmaratne, M., Kulkarni, A. S., Taherian Fard, A., Mar, J. C.
10.1101/2022.02.13.480299 — Posted: 2022-02-15 — Discussion: 2023-03-04  GigaScience
A Chromosome-level Assembly of the Japanese Eel Genome, Insights into Gene Duplication and Chromosomal Reorganization
WANG, H., WAN, H. T., WU, B., JIAN, J., NG, A. H., CHUNG, C. Y.-L., CHOW, E. Y.-C., ZHANG, J., WONG, A. O., LAI, K. P., CHAN, T. F., Zhang, E. L., WONG, C. K.-C.
10.1101/2022.06.28.497880 — Posted: 2022-07-01 — Discussion: 2023-03-04  GigaScience
Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering.
Avesani, S., Viesi, E., Alessandrì, L., Motterle, G., Bonnici, V., Beccuti, M., Calogero, R., Giugno, R.
10.1101/2022.04.27.489655 — Posted: 2022-04-28 — Discussion: 2023-03-01  GigaScience
Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing
Dahn, H. A., Mountcastle, J., Balacco, J., Winkler, S., Bista, I., Schmitt, A. D., Vinnere Pettersson, O., Formenti, G., Oliver, K., Smith, M., Tan, W., Kraus, A., Mac, S., Komoroske, L. M., Lama, T., Crawford, A. J., Murphy, R. W., Brown, S., Scott, A. F., Morin, P. A., Jarvis, E. D., Fedrigo, O.
10.1101/2021.07.13.451380 — Posted: 2021-07-14 — Discussion: 2023-03-01  GigaScience

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