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381 Reviews — GigaScience — All Subjects

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HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
A high-throughput multiplexing and selection strategy to complete bacterial genomes
Arredondo-Alonso, S., Pöntinen, A. K., Cleon, F., Gladstone, R. A., Schürch, A. C., Johnsen, P. J., Samuelsen, O., Corander, J.
10.1101/2021.06.14.448320 — Posted: 2021-06-14 — Discussion: 2022-03-14  GigaScience
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS
Sriram, V., Shivakumar, M., Jung, S.-H., Bang, L., Verma, A., Lee, S., Choe, E. K., Kim, D.
10.1101/2020.10.27.357103 — Posted: 2020-10-27 — Discussion: 2022-03-14  GigaScience
Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience
To assemble or not to resemble -- A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T., Jacobsen, C. S.
10.1101/642348 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
Arteria: An automation system for a sequencing core facility
Dahlberg, J., Hermansson, J., Sturlaugsson, S., Larsson, P.
10.1101/214858 — Posted: 2017-11-06 — Discussion: 2022-03-14  GigaScience
Genome size evolution in the diverse insect order Trichoptera
Heckenhauer, J., Frandsen, P. B., Sproul, J. S., Li, Z., Paule, J., Larracuente, A. M., Maughan, P. J., Barker, M. S., Schneider, J. V., Pauls, S. U.
10.1101/2021.05.10.443368 — Posted: 2021-05-10 — Discussion: 2022-03-14  GigaScience
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Feron, R., Waterhouse, R. M.
10.1101/2021.10.15.464561 — Posted: 2021-10-16 — Discussion: 2022-03-14  GigaScience
PathwayMatcher: multi-omics pathway mapping and proteoform network generation
Hernandez Sanchez, L. F., Burger, B., Horro, C., Fabregat, A., Johansson, S., Njolstad, P. R., Barsnes, H., Hermjakob, H., Vaudel, M.
10.1101/375097 — Posted: 2018-07-23 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience

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