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375 Reviews — GigaScience — All Subjects

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GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Poudel, R., Trujillo Rodriguez, L., Reisch, C. R., Rivers, A. R.
10.1101/2021.06.28.450164 — Posted: 2021-06-29 — Discussion: 2022-04-08  GigaScience
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar
Qi, W., Lim, Y.-W., Patrignani, A., Schlaepfer, P., Bratus-Neuenschwander, A., Grueter, S., Chanez, C., Rodde, N., Prat, E., Vautrin, S., Fustier, M.-A., Pratas, D., Schlapbach, R., Gruissem, W.
10.1101/2021.11.16.468774 — Posted: 2021-11-19 — Discussion: 2022-04-08  GigaScience
Triku: a feature selection method based on nearest neighbors for single-cell data
Ascension, A. M., Ibanez-Sole, O., Inza, I., Izeta, A., Arauzo-Bravo, M. J.
10.1101/2021.02.12.430764 — Posted: 2021-02-16 — Discussion: 2022-03-20  GigaScience
Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework
Fahrner, M., Foell, M. C., Gruening, B., Bernt, M., Rost, H., Schilling, O.
10.1101/2021.07.21.453197 — Posted: 2021-07-22 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
Miladi, M., Sokhoyan, E., Houwaart, T., Heyne, S., Costa, F., Gruening, B., Backofen, R.
10.1101/550335 — Posted: 2019-02-20 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience

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