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359 Reviews — GigaScience — All Subjects

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Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
LED light gradient as a screening tool for light quality responses in model plant species
Lejeune, P., Fratamico, A., Bouche, F., Huerga-Fernandez, S., Tocquin, P., Perilleux, C.
10.1101/2020.10.08.320002 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data
Hoogstrate, Y., Komor, M. A., Böttcher, R., van Riet, J., van de Werken, H. J. G., van Lieshout, S., Hoffmann, R., van den Broek, E., Bolijn, A. S., Dits, N., Sie, D., van der Meer, D., Pepers, F., Bangma, C. H., van Leenders, A. J. H. L., Smid, M., French, P. J., Martens, J. W. M., van Workum, W., van der Spek, P. J., Janssen, B., Caldenhoven, E., Rausch, C., de Jong, M., Stubbs, A. P., Meijer, G. A., Fijneman, R. J. A., Jenster, G.
10.1101/2021.05.17.441778 — Posted: 2021-05-17 — Discussion: 2022-03-14  GigaScience
The Preprocessed Connectomes Project Repository of Manually Corrected Skull-stripped T1-weighted Anatomical MRI Data.
Benjamin Puccio, James P Pooley, John S Pellman, Elise C Taverna, Richard Cameron Craddock
10.1101/067017 — Posted: 2016-07-31 — Discussion: 2022-03-14  GigaScience
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
Miladi, M., Sokhoyan, E., Houwaart, T., Heyne, S., Costa, F., Gruening, B., Backofen, R.
10.1101/550335 — Posted: 2019-02-20 — Discussion: 2022-03-14  GigaScience
A high-throughput multiplexing and selection strategy to complete bacterial genomes
Arredondo-Alonso, S., Pöntinen, A. K., Cleon, F., Gladstone, R. A., Schürch, A. C., Johnsen, P. J., Samuelsen, O., Corander, J.
10.1101/2021.06.14.448320 — Posted: 2021-06-14 — Discussion: 2022-03-14  GigaScience
Benchmark of lncRNA Quantification for RNA-Seq of Cancer Samples
Zheng, H., Brennan, K., Hernaez, M., Gevaert, O.
10.1101/241869 — Posted: 2018-01-02 — Discussion: 2022-03-14  GigaScience
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS
Sriram, V., Shivakumar, M., Jung, S.-H., Bang, L., Verma, A., Lee, S., Choe, E. K., Kim, D.
10.1101/2020.10.27.357103 — Posted: 2020-10-27 — Discussion: 2022-03-14  GigaScience

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