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439 Reviews — GigaScience — All Subjects

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Predicting Drug Repurposing Candidates and Their Mechanisms from A Biomedical Knowledge Graph
Ma, C., Zhou, Z., Liu, H., Koslicki, D.
10.1101/2022.11.29.518441 — Posted: 2022-12-02 — Discussion: 2023-09-04  GigaScience
Haplogenomes of Eucalyptus urophylla and E. grandis
Lötter, A., Duong, T., Candotti, J., Mizrachi, E., Wegrzyn, J. L., Myburg, A. A.
10.1101/2022.08.17.501336 — Posted: 2022-08-18 — Discussion: 2023-09-04  GigaScience
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Himmelstein, D. S., Zietz, M., Rubinetti, V., Kloster, K., Heil, B. J., Alquaddoomi, F., Hu, D., Nicholson, D. N., Hao, Y., Sullivan, B. D., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522941 — Posted: 2023-01-07 — Discussion: 2023-08-21  GigaScience
SODAR: enabling, modeling, and managing multi-omics integration studies
Nieminen, M., Stolpe, O., Kuhring, M., Weiner, J., Pett, P., Beule, D., Holtgrewe, M.
10.1101/2022.08.19.504516 — Posted: 2022-08-22 — Discussion: 2023-08-21  GigaScience
Metaphor - A workflow for streamlined assembly and binning of metagenomes
Salazar, V. W., Shabban, B., del Mar Quiroga, M., Turnbull, R., Tescari, E., Marcelino, V. R., Verbruggen, H., Le Cao, K.-A.
10.1101/2023.02.09.527784 — Posted: 2023-02-10 — Discussion: 2023-08-21  GigaScience
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
Barros, C. P., Derks, M. F., Mohr, J., Wood, B., Crooijmans, R. P., Megens, H.-J., Bink, M. C., Groenen, M. A.
10.1101/2022.08.18.504375 — Posted: 2022-08-18 — Discussion: 2023-08-21  GigaScience
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
Zeng, W., Gautam, A., Huson, D. H.
10.1101/2023.01.04.522704 — Posted: 2023-01-04 — Discussion: 2023-08-21  GigaScience
EraSOR: Erase Sample Overlap in polygenic score analyses
Choi, S. W., Mak, T. S. H., Hoggart, C. J., O'Reilly, P. F.
10.1101/2021.12.10.472164 — Posted: 2021-12-13 — Discussion: 2023-07-04  GigaScience
Training Infrastructure as a Service
Rasche, H., Gruening, B. A.
10.1101/2020.08.23.263509 — Posted: 2020-08-24 — Discussion: 2023-07-04  GigaScience
FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis
Negwer, M., Bosch, B., Bormann, M., Hesen, R., Lütje, L., Aarts, L., Rossing, C., Nadif Kasri, N., Schubert, D.
10.1101/2023.02.16.528882 — Posted: 2023-02-18 — Discussion: 2023-06-19  GigaScience

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