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97 Reviews — GigaScience — Genomics

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Indexcov: fast coverage quality control for whole-genome sequencing
Pedersen, B. S., Collins, R. L., Talkwoski, M. E., Quinlan, A. R.
10.1101/148296 — Posted: 2017-06-09 — Discussion: 2022-01-13  GigaScience
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Boris Simovski, Daniel Vodak, Sveinung Gundersen, Diana Domanska, Abdulrahman Azab, Lars Holden, Marit Holden, Ivar Grytten, Knut Dagestad Rand, Finn Drablos, Morten Johansen, Antonio Mora, Christin Lund-Andersen, Bastian Fromm, Ragnhild Eskeland, Odd Stokke Gabrielsen, Sigve Nakken, Mads Bengtsen, Alexander Johan Nederbragt, Hildur Sif Thorarensen, Johannes Andreas Akse, Ingrid Glad, Eivind Hovig, Geir Kjetil Sandve
10.1101/067561 — Posted: 2016-08-03 — Discussion: 2022-01-13  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
Josh Quick, Aaron Quinlan, Nicholas Loman
10.1101/009613 — Posted: 2014-09-26 — Discussion: 2022-01-03  GigaScience
Comparison of long read methods for sequencing and assembly of a plant genome
Murigneux, V., Rai, S. K., Furtado, A., Bruxner, T. J. C., Tian, W., Ye, Q., Wei, H., Yang, B., Harliwong, I., Anderson, E., Mao, Q., Drmanac, R., Wang, O., Peters, B., Xu, M., Wu, P., Topp, B., Coin, L. J. M., Henry, R. J.
10.1101/2020.03.16.992933 — Posted: 2020-03-18 — Discussion: 2021-08-29  GigaScience
Biodiversity genomics of small metazoans: high quality de novo genomes from single specimens of field-collected and ethanol-preserved springtails
Schneider, C., Woehle, C., Greve, C., D'Haese, C. A., Wolf, M., Janke, A., Balint, M., Hüttel, B.
10.1101/2020.08.10.244541 — Posted: 2020-08-11 — Discussion: 2021-08-17  GigaScience

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