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75 Articles

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multiVIB: A unified probabilistic contrastive learning framework for atlas-scale integration of single-cell multi-omics data
Xu, Y., Fleming, S. J., Wang, B., Schoenbeck, E. G., Babadi, M., Huo, B.-X.
10.1101/2025.11.29.691308 — Posted: 2026-05-05
A layered standards framework for integrating single-cell and spatial omics data into brain cell atlases
Ray, P. L., Miller, J. A., Jarecka, D., Smith, K. A., Baker, P. M., Ng, L., Martone, M. E., Trivedi, P., Abeysinghe, R., Anderson, L., Bandrowski, A. E., Edyta, V., Bhandiwad, A. A., Chhetri, T. R., Cui, L., Giglio, M., Goldy, J., Hong, N., Huang, H., Huang, Y., Hussain, Y., Johansen, N., Kenney, M., Kruse, L., Li, X., Meldrim, J., Mollenkopf, T., Nadendla, S., Osumi-Sutherland, D., Sanchez, R., Scheuermann, R. H., Tao, S., Vanderburg, C. R., Yang, Y., Ropelewski, A., Mufti, S., Lein, E., Xu, H., Zheng, W. J., Ghosh, S. S., White, O., Hawrylycz, M., Zhang, G.-Q., Thompson, C. L.
10.64898/2026.04.30.722039 — Posted: 2026-05-04
Cell type-selective AADC expression reduces motor deficits and dyskinesia in Parkinson's disease mouse models
Chowdhury, A., Fraser, A., Departee, M., Taskin, N., Quinlan, M. A., Mich, J. K., Omstead, V., Lerma, N., Opitz-Araya, X., Hughes, A. C., Kussick, E., Martinez, R., Reding, M., Liang, E., Shulga, L., Rette, D., Huang, C., Casian, B., Leibly, M., Helback, O., Barcelli, T., Wood, T., Uribe, N., Bacon, C., Bowlus, J., Newman, D., Kutsal, R., Khem, S., Donadio, N., Yao, S., Ronellenfitch, K., Wright, V., Gudsnuk, K., Horwitz, G. D., Levi, B. P., Lein, E. S., Ting, J. T., Daigle, T. L.
10.64898/2026.01.20.700641 — Posted: 2026-04-27
A Community Standard Multispecies Cell Atlas of the Basal Ganglia
Ecker, J. R., Hawrylycz, M., Lein, E., Ren, B., Thompson, C., Zeng, H., White, O., Zhang, G.-Q.
10.64898/2026.04.14.717814 — Posted: 2026-04-15
Inter-individual variation of cellular and gene-expression properties of the human striatum
Burger, S., Yoo, O., Nemesh, J., Muratoglu, E., Vanderburg, C., Yuan, J., Shakir, K., Mello, C. J., Rayan, N. A., Milidantri, J., Kim, K., Drouin, S., Finn, E., Gao, H., Budnik, N., Goldman, M., Fritch, H., Genovese, G., Hogan, M., Catalini, O., Kashin, S., Rockweiler, N., Wysoker, A., Macaisa, L., Reese, L., Flowers, K., Kraft, A. W., Fleming, S. J., Coe, M., Gunaratne, R., Spina, L., Crombie, C., Mohsin, A., Kamitaki, N., Macosko, E. Z., Ichihara, K., McCarroll, S. A.
10.64898/2026.03.20.713160 — Posted: 2026-03-23
MapMyCells: High-performance mapping of unlabeled cell-by-gene data to reference brain taxonomies
Daniel, S. F., Lee, C., Mollenkopf, T., Lee, M., Arbuckle, J., Fiabane, E., Gabitto, M. I., Johansen, N., Kapen, I., Kraft, A. W., Lai, J., Li, S. Y., McGinty, R., Miller, J. A., Welch-Moosman, S., Otto, S., Sawyer, L., Shepard, N., Thompson, C. L., Tjaernberg, A., Waters, J., Zhen, X., Macosko, E., Lein, E., Ng, L., Zeng, H., Mufti, S., Yao, Z., Hawrylycz, M.
10.64898/2026.03.06.710160 — Posted: 2026-03-09
Mesoscale molecular architecture of the human striatum across cell types and lifespan
Kraft, A. W., Lee, M., Rayan, N., Gao, H., Milidantri, J., Vanderburg, C., Balderrama, K., Nadaf, N., Kumar, V., Flowers, K., Finn, E., Shabet, M., Muratoglu, E., Yoo, O., Shakir, K., Nemesh, J., Burger, S., Drouin, S., Catalini, O., Raj, M., Mohsin, A., Budnik, N., Reese, L., McCarroll, S. A., Ichihara, K., Macosko, E. Z.
10.64898/2026.03.04.709715 — Posted: 2026-03-06
A Cross-Species Enhancer-AAV Toolkit for Cell Type-Specific Targeting Across the Basal Ganglia
Wirthlin, M. E., Hunker, A. C., Somasundaram, S., Lerma, M. N., Laird, W. D., Omstead, V., Taskin, N., Kempynck, N., Schmitz, M. T., Gao, Y., Thomas, E., Hooper, M., Ben-Simon, Y., Martinez, R. A., Opitz-Araya, X., Mich, J. K., Oster, A., Dwivedi, D., Groce, E., Roth, J., Thyagarajan, B., Way, S., Amaya, A., Ayala, A., Barta, S., Bertagnolli, D., Bixby, M., Cardenas, T., Casper, T., Clark, M., Donadio, N., Dotson, N. I., Egdorf, T., Peterson, E. L., Gloe, J., Goldy, J., Grasso, C., Han, W., Hastings, S. D., Hewitt, M., Hirschstein, D., Ho, W., Huang, A., Johnson, T., Jones, D., Jordan, A., Jun
10.64898/2026.02.23.706695 — Posted: 2026-02-27
Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum
Liu, X.-P., Dalley, R., Johansen, N., Budzillo, A., Thijssen, J., Miller, J. A., Walling-Bell, S., Sawchuk, S., Alfiler, L., Andrade, J., Ayala, A., Barta, S., Berry, K., Bertagnolli, D., Bhandiwad, A., Bixby, M., Blake, K., Brouner, K., Cardenas, T., Casper, T., Chakka, A. B., Chartrand, T., Daniel, S., Donadio, N., Dotson, N. I., Egdorf, T., Enstrom, R., Fu, Y., Gary, A., Goldy, J., Gorham, M., Hadley, K., Huang, A., Hunker, A. C., Jordan, A., Juneau, Z. C., Jungert, M., Kannan, M., Kapen, I., Khem, S., Koch, M., Kocsis, K., Kutsal, R., Leon, G., Mallory, M., Malone, J., McCutcheon, A., McGr
10.64898/2026.02.26.708019 — Posted: 2026-02-26
A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia
Ding, W., Klein, A., Baez-Becerra, C. T., Rink, J. A., Bartlett, A., Zeng, Q., Wang, R., Castanon, R. G., Nery, J. R., Osgood, E., Owens, W., Petrella, A., Chen, C., Acerbo, A. S., Barcoma, A. S., Liu, J., Russo, K. G., Knutson, K. W., Young, C. K., Willier, J. K., Barragan, C., Arzavala, J., Cho, S., Altshul, J., Chan, D., Soma, E., Luo, J., Jain, M., Velazquez, S., Schenker-Ahmed, N., Sundaram, G. V., Manning, A. C., Sanchez, Y., Bikkina, A., Fu, S., OConnor, C., Liem, M., Marrin, M. V., Rose, C., Alt, S. N., Berry, J., Kern, C., Boone, E., Tian, W., Wu, Y., Hariharan, M., Fu, Y., Xie, Y., L
10.64898/2026.02.12.705594 — Posted: 2026-02-14

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