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78 Articles

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Common variation of cell abundances and gene expression in the human striatum
Burger, S., Nemesh, J., Yoo, O., Muratoglu, E., Vanderburg, C., Yuan, J., Shakir, K., Mello, C. J., Gao, H., Rayan, N. A., Finn, E., Milidantri, J., Mohsin, A., Kim, K., Drouin, S., Budnik, N., Goldman, M., Bratchikov, S., Fritch, H., Genovese, G., Hogan, M., Catalini, O., Kashin, S., Rockweiler, N., Wysoker, A., Macaisa, L., Reese, L., Flowers, K., Kraft, A. W., Fleming, S. J., Coe, M., Gunaratne, R., Spina, L., Fischer, G., Crombie, C., Kamitaki, N., Macosko, E. Z., Ichihara, K., McCarroll, S. A.
10.64898/2026.03.20.713160 — Posted: 2026-11-03
Iterative co-creation of harmonized human and non-human primate cellular and structural ontologies and 3D common coordinate frameworks for the basal ganglia
Ding, S.-L., Bhandiwad, A., Rosen, B., Seeman, S. C., Long, B., Johansen, N. J., Bayindir, U., Facer, B., Fu, Y., Halimi, Y., Hou, Y., Hu, D., Huang, M., Ikeda, T., Kalmbach, B., Kruse, L., Lesnar, P., Liu, X.-P., Luo, Z., Ray, P., Royall, J. J., Schmitz, M. T., Uematsu, A., Vezoli, J., Yazdani, F., Bakken, T. E., Freiwald, W., Hayashi, T., Hodge, R. D., Kennedy, H., Mollenkopf, T., Ng, L., Osumi-Sutherland, D., Thompson, C. L., Hawrylycz, M., Glasser, M. F., Van Essen, D. C., Zeng, H., Lein, E. S.
10.64898/2026.07.30.741796 — Posted: 2026-08-04
A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia
Ding, W., Klein, A., Baez-Becerra, C. T., Rink, J. A., Bartlett, A., Wang, R., Zeng, Q., Castanon, R. G., Nery, J. R., Osgood, E., Owens, W., Petrella, A., Chen, C., Acerbo, A. S., Barcoma, A. S., Liu, J., Russo, K. G., Knutson, K. W., Young, C. K., Willier, J. K., Barragan, C., Arzavala, J., Cho, S., Altshul, J., Chan, D., Soma, E., Luo, J., Jain, M., Velazquez, S., Sundaram, G. V., Manning, A. C., Sanchez, Y., Bikkina, A., Fu, Y., Komandur, K., Doan, E., Fu, S., OConnor, C., Liem, M., Marrin, M. V., Rose, C., Alt, S. N., Berry, J., Kern, J. C., Boone, E., Tian, W., Chen, H., Xie, Y., Wu, Y.
10.64898/2026.02.12.705594 — Posted: 2026-06-23
Enterprise Health Twins - Conceptual Framework, Design Principles,and Longitudinal Evaluation: Preliminary Results from EpiToMe
ZHANG, G.-Q., Cui, L., Lhatoo, S., Chou, W.-C., Hampson, J., Tao, S.
10.64898/2025.12.06.692733 — Posted: 2026-06-23
Spatial and Molecular Progression of Neural Progenitor Cells in the Developing Human Dentate Gyrus
Paredes, M. F., Pastor-Alonso, O., Heffel, M., Baig, M. S., Harris, J., Granero, S. G., Li, S., Beccari, S., Chu, J., Lambing, H., Lu, I.-L., Varughese, M., Cheng, A. L., Le, J., Bhade, M., Kim, J., Cebrian-Silla, A., Cuevas, I. T., Auguste, K. I., Huang, E., Alvarez-Buylla, A., Gomez, J., Garcia Verdugo, J. M., Luo, C.
10.64898/2026.06.06.730648 — Posted: 2026-06-08
Spatial patterning of transcriptional and regulatory programs in the primate subcortex
Dan, S., Turner, M. A., DeBerardine, M., Caceres, L., Nieto, V. E., Schembri, J., Levandowski, K., Cardenas, C., Wang, N., Li, C., Basu, S., Zheng, H., Liu, X., Hollt, T., Feliciano, J., Zhang, Q., Nakamoto, R., McMillen, D. A., Martin, N., Cuevas, N. V., Olsen, P., Nagra, J., Campos, J., VanNess, M. M., Waters, J., Ransford, S., Juneau, Z., Hastings, S., Barta, S., Ruiz, A., Ariza, J., Raphael, B. J., Zeng, H., Lein, E. S., Lelieveldt, B., Feng, G., Long, B., Krienen, F. M.
10.1101/2025.11.22.689869 — Posted: 2026-05-15
multiVIB: A unified probabilistic contrastive learning framework for atlas-scale integration of single-cell multi-omics data
Xu, Y., Fleming, S. J., Wang, B., Schoenbeck, E. G., Babadi, M., Huo, B.-X.
10.1101/2025.11.29.691308 — Posted: 2026-05-05
A layered standards framework for integrating single-cell and spatial omics data into brain cell atlases
Ray, P. L., Miller, J. A., Jarecka, D., Smith, K. A., Baker, P. M., Ng, L., Martone, M. E., Trivedi, P., Abeysinghe, R., Anderson, L., Bandrowski, A. E., Edyta, V., Bhandiwad, A. A., Chhetri, T. R., Cui, L., Giglio, M., Goldy, J., Hong, N., Huang, H., Huang, Y., Hussain, Y., Johansen, N., Kenney, M., Kruse, L., Li, X., Meldrim, J., Mollenkopf, T., Nadendla, S., Osumi-Sutherland, D., Sanchez, R., Scheuermann, R. H., Tao, S., Vanderburg, C. R., Yang, Y., Ropelewski, A., Mufti, S., Lein, E., Xu, H., Zheng, W. J., Ghosh, S. S., White, O., Hawrylycz, M., Zhang, G.-Q., Thompson, C. L.
10.64898/2026.04.30.722039 — Posted: 2026-05-04
Cell type-selective AADC expression reduces motor deficits and dyskinesia in Parkinson's disease mouse models
Chowdhury, A., Fraser, A., Departee, M., Taskin, N., Quinlan, M. A., Mich, J. K., Omstead, V., Lerma, N., Opitz-Araya, X., Hughes, A. C., Kussick, E., Martinez, R., Reding, M., Liang, E., Shulga, L., Rette, D., Huang, C., Casian, B., Leibly, M., Helback, O., Barcelli, T., Wood, T., Uribe, N., Bacon, C., Bowlus, J., Newman, D., Kutsal, R., Khem, S., Donadio, N., Yao, S., Ronellenfitch, K., Wright, V., Gudsnuk, K., Horwitz, G. D., Levi, B. P., Lein, E. S., Ting, J. T., Daigle, T. L.
10.64898/2026.01.20.700641 — Posted: 2026-04-27
A Community Standard Multispecies Cell Atlas of the Basal Ganglia
Ecker, J. R., Hawrylycz, M., Lein, E., Ren, B., Thompson, C., Zeng, H., White, O., Zhang, G.-Q.
10.64898/2026.04.14.717814 — Posted: 2026-04-15

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