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77 Articles

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The Caudate Nucleus Exhibits Distinct Pathology and Cell Type-Specific Responses Across Alzheimer's Disease
Kana, O. Z., Postupna, N., Agrawal, A., Long, B., Travaglini, K., Gabitto, M., Lai, H.-Y., Mahoney, J. T., Xiao, M., Bajwa, T., Hulsey-Vincent, H., Oyaizu, S. L., Mena, G. E., Hong, J., Gelfand, E. C., Kaplan, E. S., Ariza, J., Smith, K. A., McMillen, D. A., Hastings, S. D., Chakka, A. B., Goldy, J., Melief, E. J., Juneau, Z., Barta, S., Oyama, A., Ruiz, A., Pom, C. A., Ayala, A., Bixby, M., Huang, A., Martin, N., Cuevas, N. V., Olsen, P., Nagra, J., Chakrabarty, R., Tieu, M., Cardenas, T., Torkelson, A., Bertagnolli, D., Guzman, J., Ferrer, R., Waters, J., Grabowski, T. J., Crane, P. K., Gatt
10.64898/2026.01.10.694705 — Posted: 2026-01-15
Progenitor Diversity and Architecture of the Human Ganglionic Eminences Shaping the Basal Ganglia
Siebert, C. V., Song, M., Moriano, J. A., Li, Z., Silla, A. C., Walker, M., Chen, S., Baltazar, J., Oliveira, L. G. d., Shankar, M., Xie, Y., Suraparaju, P., Wang, S., Bi, Q., Xie, Y., Ren, Y., Garcia, M. T., Wang, L., Zuo, G., Smidt, M. P., Hoekman, M. F. M., Harwell, C., Parent, J., Rubenstein, J., Alvarez-Buylla, A., Kriegstein, A.
10.64898/2025.12.31.697063 — Posted: 2026-01-02
UC Irvine Brain Initiative Cell Atlas Network (BICAN) Brain Procurement Program for the Center for Multiomic Human Brain Cell Atlas Project
Xu, X., Berry, J. V., Tran, B. M., Wu, G., Tan, Z., Mendoza, E., Kim, M., Arat, Z., Lin, P. S. H., Valenzuela, L., Holmes, T. C., Virovka, A., Thaxton, M., Nguyen, M., Stein, S., Sigaroudi, V. R., De La Rosa, A., Gawronski, B., Silva, J., Gonzalez, L., Wright, S., Wood, K., Hui, G. K., Anousaya, D., Gangeddula, V. R., Gama, N., Gama, J., Gross, T., Bunney, B., Stein, R., Sequeira, P. A., Mamdani, F., Cartagena, P., Bunney, W. E., Lou, J., Park, H. L., Wilson, A., Brooks, H. M., Allhusen, V., Crawford, J., Knight, J. M., Ren, B., Ecker, J., Behrens, M. M., Keene, C. D., Stark, C., Head, E., Yon
10.64898/2025.12.23.696304 — Posted: 2025-12-26
Circuit specific specialization of human basal ganglia astrocytes
Fu, Y., Johansen, N. J., Kempynck, N., Ding, W., Turner, M. A., Garcia, A. D., Schmitz, M. T., Close, J., Kapen, I., Hewitt, M., Seeman, S. C., Long, B., Ding, S.-L., Ho, W., Mahoney, J., Mich, J. K., Levi, B. P., Klein, A., Behrens, M. M., Ecker, J., Aerts, S., Hodge, R. D., Lein, E. S., Bakken, T. E.
10.64898/2025.12.19.695583 — Posted: 2025-12-22
Cross-species consensus atlas of the primate basal ganglia
Johansen, N. J., Fu, Y., Schmitz, M., Dubuc, A., Kempynck, N., Wirthlin, M., Garcia, A. D., Hewitt, M., Turner, M. A., Seeman, S. C., Long, B., Liu, X.-P., Dan, S., DeBerardine, M., Kapen, I., Yanny, A. M., Avola, A., Barlow, S. T., Bertagnolli, D., Bhandiwad, A., Budzillo, A., Caballero, V. E. N., Caceres, L., Casper, T., Chakka, A. B., Chakrabarty, R., Clark, M., Daniel, S., Eggermont, J., Ferrer, R., French, L., Gloe, J., Goldy, J., Guilford, N., Guzman, J., Hirschstein, D., Ho, W., James, K., Jones, D. L., Jungert, M., Kannan, M., Kedzierska, K. Z., Kroes, T., Leytze, M., Manning, A., McCu
10.64898/2025.12.15.694496 — Posted: 2025-12-16
Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization
Berackey, B. T., Tan, Z., Wu, G., Das, S. C., Li, R., Esser, B., Ye, Q., Nafisi, M., Park, S. S., Sequeira Mendieta, P. A., Berry, J., Mamdani, F., Zhu, Q., Holmes, T. C., Li, D., Wang, T., Behrens, M. M., Ren, B., Ecker, J. R., Bintu, B., Xu, X.
10.64898/2025.12.02.691876 — Posted: 2025-12-05
Fast Optimization of Robust Transcriptomics Embeddings using Probabilistic Inference Autoencoder Networks for multi-Omics
Wang, N., Turner, D., Feinberg, H., Nieto Caballero, V. E., Yuan, D., Scott, N., Cardenas, C., DeBerardine, M., Dan, S., Caceres, L., Schembri, J., Yao, Z., Lee, C., Pillow, J. W., Krienen, F. M.
10.1101/2025.11.16.686778 — Posted: 2025-11-27
A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia
Hewitt, M. N., Turner, M. A., Johansen, N., McMillen, D. A., Dan, S., DeBerardine, M., Ruiz, A., Huang, M., Quon, J., Fu, Y., Kapen, I., Barta, S., Martin, N., Cuevas, N. V., Olsen, P., Nagra, J., Campos, J., VanNess, M. M., Ransford, S., Juneau, Z., Hastings, S., Ching, L., Kunst, M., Basu, S., Hollt, T., Li, C., Lelieveldt, B., Yazdani, F., Zhang, Q., Levandowski, K., Feng, G., Rosen, B., Glasser, M. F., Hayashi, T., Garcia, A. D., Kana, O., Maltzer, Z. M., Campagnola, L., Jarsky, T., Kruse, L., Freiwald, W., Keene, C. D., Van Essen, D. C., Ariza, J., Waters, J., Krienen, F. M., Bakken, T. E
10.1101/2025.11.22.688128 — Posted: 2025-11-24
Disruption of Cell-Type-Specific Molecular Programs of Medium Spiny Neurons in Autism
Yuan, G., Suresh, V., Wigdor, E., Hao, Y., Leonard, R., Steyert, M., Griffiths, M., Evans, C., Rohani, N., Weiss, J., Lassen, F. H., Schafer, N., Dong, S., Palmer, D. S., Sanders, S. J., Nowakowski, T. J.
10.1101/2025.11.05.686845 — Posted: 2025-11-07
A three-dimensional histological cell atlas of the developing human brain
Jayakumar, J., Sivaprakasam, M., Verma, R., Bota, M., Joseph, J., Mulay, S., Kumutha, J., Srinivasan, C., S, S., S, L., Kumar, H. E., Bhaduri, A., Nowakowski, T. J., Roy, P. K., Savoia, S., Banerjee, S., Tward, D., Mitra, P. P.
10.1101/2024.12.17.628811 — Posted: 2024-12-18

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