Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

Spring Model - chromatin modeling tool based on OpenMM
Kadlof, M., Rozycka, J., Plewczynski, D.
10.1101/642322 — Posted: 2019-05-20
Ultrastructural details of mammalian chromosome architecture
Krietenstein, N., Abraham, S., Venev, S., Abdennur, N., Gibcus, J., Hsieh, T.-H., Parsi, K. M., Yang, L., Maehr, R., Mirny, L., Dekker, J., Rando, O.
10.1101/639922 — Posted: 2019-05-17
Resolving the 3D landscape of transcription-linked mammalian chromatin folding
Hsieh, T.-H. S., Slobodyanyuk, E., Hansen, A. S., Cattoglio, C., Rando, O. J., Tjian, R., Darzacq, X.
10.1101/638775 — Posted: 2019-05-17
Improved CUT&RUN chromatin profiling and analysis tools
Meers, M. P., Bryson, T. D., Henikoff, S.
10.1101/569129 — Posted: 2019-05-16
Spatial genome re-organization between fetal and adult hematopoietic stem cells
Chen, C., Yu, W., Tober, J., Gao, P., He, B., Lee, K., Trieu, T., Blobel, G., Speck, N., Tan, K.
10.1101/628214 — Posted: 2019-05-05
Photoactivation of silicon rhodamines via a light-induced protonation
Frei, M. S., Hoess, P., Lampe, M., Nijmeijer, B., Kueblbeck, M., Ellenberg, J., Ries, J., Pitsch, S., Reymond, L., Johnsson, K.
10.1101/626853 — Posted: 2019-05-04
Tibanna: software for scalable execution of portable pipelines on the cloud
Lee, S., Johnson, J., Vitzthum, C., Kırlı, K., Alver, B. H., Park, P. J.
10.1101/440974 — Posted: 2019-04-29
Super resolution imaging of a distinct chromatin loop in human lymphoblastoid cells
Ruan, Y., Plewczynski, D., Zhu, J. J., Parteka, Z., Lee, B., Szalaj, P., Wang, P., Jodkowska, K., Arron, J., Chew, T. L.
10.1101/621920 — Posted: 2019-04-29
ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions
Tian, S. Z., Capurso, D., Kim, M., Lee, B., Zheng, M., Ruan, Y.
10.1101/613034 — Posted: 2019-04-18
Multi-scale deep tensor factorization learns a latent representation of the human epigenome
Schreiber, J., Durham, T. J., Bilmes, J., Noble, W. S.
10.1101/364976 — Posted: 2019-04-11

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