Channel:  International Human Epigenome Consortium (IHEC)

41 Articles

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The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data
Hecker, D., Behjati Ardakani, F., Karollus, A., Gagneur, J., Schulz, M. H.
10.1101/2022.01.28.478202 — Posted: 2022-12-17
Chromatin state modeling across individuals reveals global patterns of histone modifications
Zou, J., Ernst, J.
10.1101/2022.08.02.502571 — Posted: 2022-08-03
ChromGene: Gene-Based Modeling of Epigenomic Data
Jaroszewicz, A., Ernst, J.
10.1101/2022.05.24.493345 — Posted: 2022-07-05
TF-COMB - discovering grammar of transcription factor binding sites
Bentsen, M., Heger, V., Schultheis, H., Kuenne, C., Looso, M.
10.1101/2022.06.21.496953 — Posted: 2022-06-22
SARS-CoV-2 impacts the transcriptome and epigenome at the maternal-fetal interface in pregnancy
Gao, L., Mathur, V., Tam, S. K. M., Zhou, X., Cheung, M. F., Chan, L. Y., Estrada-Gutierrez, G., Leung, B. W., Moungmaithong, S., Wang, C. C., Poon, L., Leung, D. C. Y.
10.1101/2022.05.31.494153 — Posted: 2022-05-31
Epigenetic variation impacts ancestry-associated differences in the transcriptional response to influenza infection
Aracena, K. A., Lin, Y.-L., Luo, K., Pacis, A., Gona, S., Mu, Z., Yotova, V., Sindeaux, R., Pramatarova, A., Simon, M.-M., Chen, X., Groza, C., Lougheed, D., Gregoire, R., Brownlee, D., Li, Y., He, X., Bujold, D., Pastinen, T., Bourque, G., Barreiro, L. B.
10.1101/2022.05.10.491413 — Posted: 2022-05-11
Transposable elements are associated with the variable response to influenza infection
Chen, X., Pacis, A. S., Aracena, K. A., Gona, S., Kwan, T., Groza, C., Lin, Y. L., Sindeaux, R. H. M., Yotova, V., Pramatarova, A., Simon, M.-M., Pastinen, T. M., Barreiro, L. B., Bourque, G.
10.1101/2022.05.10.491101 — Posted: 2022-05-10
A framework for summarizing chromatin state annotations within and identifying differential annotations across groups of samples
Vu, H. T., Koch, Z., Fiziev, P., Ernst, J.
10.1101/2022.05.08.491094 — Posted: 2022-05-08
Genome graphs detect human polymorphisms in active epigenomic states during influenza infection
Groza, C., Chen, X., Pacis, A., Simon, M.-M., Pramatarova, A., Aracena, K. A., Pastinen, T., Barreiro, L. B., Bourque, G.
10.1101/2021.09.29.462206 — Posted: 2022-05-06
Universal annotation of the human genome through integration of over a thousand epigenomic datasets
Vu, H. T., Ernst, J.
10.1101/2020.11.17.387134 — Posted: 2021-09-15

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