Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

94 Articles

Evolution of transposable element-derived enhancer activity
Du, A. Y., Zhuo, X., Sundaram, V., Jensen, N. O., Chaudhari, H. G., Saccone, N. L., Cohen, B. A., Wang, T.
10.1101/2022.03.16.483999 — Posted: 2022-03-17
Automated assembly of high-quality diploid human reference genomes
Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., Cheng, H., Asri, M., Logsdon, G. A., Carnevali, P., Chaisson, M., Chin, C.-S., Cody, S., Collins, J., Ebert, P., Escalona, M., Fedrigo, O., Fulton, R. S., Fulton, L. L., Garg, S., Ghurye, J., Granat, A., Green, E., Hall, I. M., Harvey, W. H., Hasenfeld, P., Hastie, A., Haukness, M., Jaeger, E. B., Jain, M., Kirsche, M., Kolmogorov, M., Korbel, J. O., Koren, S., Korlach, J., Lee, J., Li, D., Lindsay, T., Lucas, J., Luo, F., Marschall, T., McDaniel, J., Nie, F.
10.1101/2022.03.06.483034 — Posted: 2022-03-10
The Transcription Factor Bach2 Negatively Regulates Natural Killer Cell Maturation and Function
Li, S., Bern, M., Miao, B., Inoue, T., Piersma, S. J., Colonna, M., Kurosaki, T., Yokoyama, W. M.
10.1101/2022.02.14.480364 — Posted: 2022-02-14
Exploring genomic data coupled with 3D chromatin structures using the WashU Epigenome Browser
Li, D., Purushotham, D., Harrison, J. K., Wang, T.
10.1101/2022.01.18.476849 — Posted: 2022-01-21
Improving the time and space complexity of the WFA algorithm and generalizing its scoring
Eizenga, J. M., Paten, B.
10.1101/2022.01.12.476087 — Posted: 2022-01-15
Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres
Tan, K.-T., Slevin, M., Meyerson, M., Li, H.
10.1101/2022.01.11.475254 — Posted: 2022-01-12
Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders
Porubsky, D., Höps, W., Ashraf, H., Hsieh, P., Rodriguez-Martin, B., Yilmaz, F., Ebler, J., Hallast, P., Maggiolini, F. A. M., Harvey, W. T., Henning, B., Audano, P. A., Gordon, D. S., Ebert, P., Hasenfeld, P., Benito, E., Zhu, Q., Human Genome Structural Variation Consortium, , Lee, C., Antonacci, F., Steinrücken, M., Beck, C. R., Sanders, A. D., Marschall, T., Eichler, E. E., Korbel, J. O.
10.1101/2021.12.20.472354 — Posted: 2021-12-20
LungMAP Portal Ecosystem: Systems-Level Exploration of the Lung
Gaddis, N., Fortriede, J., Guo, M., Bardes, E. E., Kouril, M., Tabar, S., Burns, K., Ardini-Poleske, M. E., Loos, S., Schnell, D., Jin, K., Iyer, B., Du, Y., Korte, J., Munshi, R., Smith, V., Herbst, A., Kitzmiller, J. A., Clair, G. C., Carson, J., Adkins, J., Morrisey, E. E., Pryhuber, G. S., Misra, R., Whitsett, J. A., Sun, X., Heathorn, T., Paten, B., Prasath, V. B. S., Xu, Y., Tickle, T., Aronow, B. J., Salomonis, N.
10.1101/2021.12.05.471312 — Posted: 2021-12-06
A Complete Pedigree-Based Graph Workflow for Rare Candidate Variant Analysis
Markello, C., Huang, C., Rodriguez, A., Carroll, A., Chang, P.-C., Eizenga, J., Markello, T., Haussler, D., Paten, B.
10.1101/2021.11.24.469912 — Posted: 2021-11-25
Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes
Wagner, J., Olson, N. D., Harris, L., McDaniel, J., Cheng, H., Fungtammasan, A., Hwang, Y.-C., Gupta, R., Wenger, A. M., Rowell, W. J., Khan, Z. M., Farek, J., Zhu, Y., Pisupati, A., Mahmoud, M., Xiao, C., Yoo, B., Sahraeian, S. M. E., Miller, D. E., Jaspez, D., Lorenzo-Salazar, J. M., Munoz-Barrera, A., Rubio-Rodriguez, L. A., Flores, C., Narzisi, G., Evani, U. S., Clarke, W. E., Lee, J., Mason, C. E., Lincoln, S. E., Miga, K. H., Ebbert, M. T., Shumate, A., Li, H., Chin, C.-S., Zook, J. M., Sedlazeck, F. J.
10.1101/2021.06.07.444885 — Posted: 2021-10-01

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