Channel:  Human Pangenome Reference Consortium (HPRC)

168 Articles

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Lossless Pangenome Indexing Using Tag Arrays
Eskandar, P., Paten, B., Siren, J.
10.1101/2025.05.12.653561 — Posted: 2025-12-05
Efficient near telomere-to-telomere assembly of Nanopore Simplex reads
Cheng, H., Qu, H., McKenzie, S., Lawrence, K. R., Windsor, R., Vella, M., Park, P. J., Li, H.
10.1101/2025.04.14.648685 — Posted: 2025-11-17
Assembling unmapped reads reveals hidden variation in South Asian genomes
Das, A., Biddanda, A., McCoy, R. C., Schatz, M.
10.1101/2025.05.14.653340 — Posted: 2025-10-30
Characterizing cytosine methylation of polymorphic human transposable element insertions using human pangenome resources
Zhuo, X., Tomlinson, C., Belter, E. A., Kuntala, P. K., Saintilnord, W. N., Jiang, J., Lindsay, T., Macias, J., Fulton, R. S., Wang, T.
10.1101/2024.11.22.623804 — Posted: 2025-10-20
map3C: a computational tool for processing multiomic single-cell Hi-C data
Galasso, J., Wang, Y., Alber, F., Ernst, J., Luo, C.
10.1101/2025.10.10.681728 — Posted: 2025-10-15
GECSI: Large-scale chromatin state imputation from gene expression
Fu, J., Ernst, J.
10.1101/2025.10.02.679828 — Posted: 2025-10-04
Integrated ambient modeling and genetic demultiplexing of single-cell RNA+ATAC multiome experiments with Ambimux
Alvarez, M., Li, T., Lee, S. H. T., Arasu, U. T., Selvarajan, I., Örd, T., Rahmani, E., Chen, Z. J., Avram, O., Kar, A., Kaminska, D., Männistö, V., Halperin, E., Pihlajamäki, J., Luo, C., Kaikkonen, M. U., Zaitlen, N., Pajukanta, P.
10.1101/2025.08.21.671671 — Posted: 2025-08-26
Perturb-seq reveals distinct responses to pluripotency regulator dosages underlying the control of self-renewal and differentiation
Yan, J., Cho, H. S., Luo, R., Beer, M. A., Li, W., Huangfu, D.
10.1101/2025.08.07.669196 — Posted: 2025-08-08
ToxiTaRGET: a multi-omics resource for toxicant-responsive molecular targets
Kumar, R., Fu, T., Kuntala, P. K., Fu, S., Li, D., Bartolomei, M. S., Walker, C. L., Wang, T., Zhang, B. A.
10.1101/2025.07.28.667228 — Posted: 2025-08-02
An Efficient Graph Algorithm for Diploid Local Ancestry Inference
Jafarzadeh, N., Eizenga, J. M., Paten, B.
10.1101/2025.07.05.662656 — Posted: 2025-07-09

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