Channel:  Human Pangenome Reference Consortium (HPRC)

171 Articles

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Structurally divergent and recurrently mutated regions of primate genomes
Mao, Y., Harvey, W. T., Porubsky, D., Munson, K. M., Hoekzema, K., Lewis, A. P., Audano, P. A., Rozanski, A., Yang, X., Zhang, S., Gordon, D. S., Wei, X., Logsdon, G. A., Haukness, M., Dishuck, P. C., Jeong, H., del Rosario, R., Bauer, V. L., Fattor, W. T., Wilkerson, G. K., Lu, Q., Paten, B., Feng, G., Sawyer, S. L., Warren, W. C., Carbone, L., Eichler, E. E.
10.1101/2023.03.07.531415 — Posted: 2023-03-07
The motif composition of variable-number tandem repeats impacts gene expression
Lu, T.-Y. T., Smaruj, P. N., Fudenberg, G., Mancuso, N., Chaisson, M.
10.1101/2022.03.17.484784 — Posted: 2023-03-05
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Lorig-Roach, R., Meredith, M., Monlong, J., Jain, M., Olsen, H., McNulty, B., Porubsky, D., Montague, T. G., Lucas, J., Condon, C., Eizenga, J., Juul, S., McKenzie, S., Simmonds, S., Park, J., Asri, M., Koren, S., Eichler, E., Axel, R., Martin, B., Carnevali, P., Miga, K., Paten, B.
10.1101/2023.02.21.529152 — Posted: 2023-02-22
Recombination between heterologous human acrocentric chromosomes
Guarracino, A., Buonaiuto, S., Gomes de Lima, L., Potapova, T., Rhie, A., Koren, S., Rubinstein, B., Fischer, C., Human Pangenome Reference Consortium, , Gerton, J. L., Phillippy, A. M., Colonna, V., Garrison, E.
10.1101/2022.08.15.504037 — Posted: 2023-01-18
Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
He, S., Shao, W., Chen, S., Wang, T., Gibson, M.
10.1101/2023.01.09.523347 — Posted: 2023-01-10
Universal chromatin state annotation of the mouse genome
Vu, H. T., Ernst, J.
10.1101/2022.12.19.521116 — Posted: 2022-12-20
A refined characterization of large-scale genomic differences in the first complete human genome
Yang, X., Wang, X., Zou, Y., Zhang, S., Xia, M., Vollger, M. R., Chen, N.-C., Taylor, D. J., Harvey, W. T., Logsdon, G. A., Meng, D., Shi, J., McCoy, R. C., Schatz, M. C., Li, W., Eichler, E. E., Lu, Q., Mao, Y.
10.1101/2022.12.17.520860 — Posted: 2022-12-19
Comparing Genomic and Epigenomic Features across Species Using the WashU Comparative Epigenome Browser
Zhuo, X., Hsu, S., Purushotham, D., Chen, S., Li, D., Wang, T.
10.1101/2022.11.29.518374 — Posted: 2022-12-02
EUGENe: A Python toolkit for predictive analyses of regulatory sequences
Klie, A., Stites, H., Jores, T., Solvason, J. J., Farley, E. K., Carter, H.
10.1101/2022.10.24.513593 — Posted: 2022-11-09
T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data
Song, L., Bai, G., Liu, X. S., Li, B., Li, H.
10.1101/2022.10.26.513955 — Posted: 2022-10-27

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