Channel:  Harvard Program in Therapeutic Sciences

114 Articles

3D multiplexed tissue imaging reconstruction and optimized region-of-interest (ROI) selection through deep learning model of channels embedding
Burlingame, E., Ternes, L., Lin, J.-R., Chen, Y.-A., Kim, E. N., Gray, J. W., Santagata, S., Sorger, P. K., Chang, Y. H.
10.1101/2022.12.09.519807 — Posted: 2022-12-12
A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets
Creason, A. L., Watson, C., Gu, Q., Persson, D., Sargent, L. L., Chen, Y.-A., Lin, J.-R., Sivagnanam, S., Wünnemann, F., Nirmal, A. J., Chin, K., Feiler, H. S., Coussens, L. M., Schapiro, D., Grüning, B. A., Sorger, P. K., Sokolov, A., Goecks, J.
10.1101/2022.08.18.504436 — Posted: 2022-12-03
Prediction and Curation of Missing Biomedical Identifier Mappings with Biomappings
Hoyt, C. T., Hoyt, A. L., Gyori, B. M.
10.1101/2022.11.29.518386 — Posted: 2022-12-02
Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining
Bachman, J. A., Sorger, P. K., Gyori, B. M.
10.1101/822668 — Posted: 2022-10-29
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange
Pillich, R. T., Chen, J., Churas, C., Fong, D., Gyori, B. M., Ideker, T., Karis, K., Liu, S. N., Ono, K., Pico, A., Pratt, D.
10.1101/2022.10.24.513552 — Posted: 2022-10-25
Unifying the Identification of Biomedical Entities with the Bioregistry
Hoyt, C. T., Balk, M., Callahan, T. J., Domingo-Fernandez, D., Haendel, M. A., Hegde, H. B., Himmelstein, D. S., Karis, K., Kunze, J., Lubiana, T., Matentzoglu, N., McMurry, J., Moxon, S., Mungall, C. J., Rutz, A., Unni, D. R., Willighagen, E., Winston, D., Gyori, B. M.
10.1101/2022.07.08.499378 — Posted: 2022-10-22
Multi range ERK responses shape the proliferative trajectory of single cells following oncogene induced senescence
Chen, J.-Y., Hug, C., Reyes, J., Tian, C., Gerosa, L., Fröhlich, F., Ponsioen, B., Snippert, H. J. G., Spencer, S. L., Jambhekar, A., Sorger, P. K., Lahav, G.
10.1101/2022.10.06.511142 — Posted: 2022-10-07
Multiplexed 3D atlas of state transitions and immune interactions in colorectal cancer
Lin, J.-R., Wang, S., Coy, S., Chen, Y.-A., Yapp, C., Tyler, M. A., Nariya, M., Heiser, C. N., Lau, K., Santagata, S., Sorger, P. K.
10.1101/2021.03.31.437984 — Posted: 2022-09-28
Paired evaluation defines performance landscapes for machine learning models
Nariya, M. K., Mills, C. E., Sorger, P. K., Sokolov, A.
10.1101/2022.09.07.507020 — Posted: 2022-09-12
Automated assembly of molecular mechanisms at scale from text mining and curated databases
Bachman, J. A., Gyori, B. M., Sorger, P. K.
10.1101/2022.08.30.505688 — Posted: 2022-08-31

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