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442 Reviews — GigaScience — All Subjects

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Robust clustering of transcriptomes through multiple testing
Kariotis, S., Tan, P. F., Lu, H., Rhodes, C. J., Wilkins, M. R., Lawrie, A., Wang, D.
10.1101/2022.12.19.519427 — Posted: 2022-12-20 — Discussion: 2024-07-31  GigaScience
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
LeRoy, N. J., Khoroshevskyi, O., O'Brien, A., Stepien, R., Arslan, A., Sheffield, N. C.
10.1101/2023.08.15.551388 — Posted: 2023-08-18 — Discussion: 2024-07-31  GigaScience
Unveiling Vertebrate Development Dynamics in Frog Xenopus laevis using Micro-CT Imaging
Laznovsky, J., Kavkova, M., Reis, A., Robovska-Havelkova, P., Krivanek, J., Zikmund, T., Kaiser, J., Buchtova, M., Harnos, J.
10.1101/2024.06.11.598452 — Posted: 2024-06-11 — Discussion: 2024-07-31  GigaScience
gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
Arıkan, M., Muth, T.
10.1101/2023.12.03.569767 — Posted: 2023-12-05 — Discussion: 2024-07-31  GigaScience
Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence.
Ferguson, S., Jones, A., Murray, K. D., Andrew, R. L., Bothwell, H., Schwessinger, B., Borevitz, J. O.
10.1101/2023.10.20.563207 — Posted: 2023-10-21 — Discussion: 2024-07-01  GigaScience
Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation
Alves, R. M., de Abreu, V. A. C., Oliveira, R. P., dos Anjos, J. V., Oliveira, M. d. M., Silva, S. R., Paschoal, A. R., Almeida, S. S., de Souza, P. A. F., Ferro, J. A., Miranda, V. F. O., Figueira, A., Domingues, D. S., Varani, A. M.
10.1101/2023.12.23.573069 — Posted: 2023-12-23 — Discussion: 2024-07-01  GigaScience
Hecatomb: An End-to-End Research Platform for Viral Metagenomics
Roach, M. J., Beecroft, S., Mihindukulasuriya, K., Wang, L., Lima, L. F. O., Dinsdale, E. A., Edwards, R., Handley, S. A.
10.1101/2022.05.15.492003 — Posted: 2022-05-16 — Discussion: 2024-07-01  GigaScience
Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi
Baroncelli, R., Cobo-Diaz, J. F., Benocci, T., Peng, M., Battaglia, E., Haridas, S., Andreopoulos, W., LaButti, K., Pangilinan, J., Lipzen, A., Koriabine, M., Bauer, D., Le Floch, G., Makela, M. R., Drula, E., Henrissat, B., Grigoriev, I. V., Crouch, J. A., de Vries, R. P., Sukno, S. A., Thon, M. R.
10.1101/2022.09.22.508453 — Posted: 2022-09-22 — Discussion: 2024-07-01  GigaScience
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data
Yang, C., Zhang, Z., Liao, H., Zhang, L.
10.1101/2022.08.10.503458 — Posted: 2022-08-13 — Discussion: 2024-07-01  GigaScience
ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection
Chu, J., Rong, J., Feng, X., Li, H.
10.1101/2023.11.01.565041 — Posted: 2023-11-03 — Discussion: 2024-07-01  GigaScience

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