bioRxiv/medRxiv TRiP Review Activity

509 Reviews — All Partners — Bioinformatics

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Hidden GPCR structural transitions addressed by multiple walker supervised molecular dynamics (mwSuMD)
Deganutti, G., Pipito, L., Rujan, R. M., Weizmann, T., Griffin, P., Ciancetta, A., Moro, S., Reynolds, C. A.
10.1101/2022.10.26.513870 — Posted: 2022-10-27 — Discussion: 2025-04-10  eLife
Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
Uematsu, M., Baskin, J. M.
10.1101/2023.04.12.536413 — Posted: 2023-04-13 — Discussion: 2025-04-04  eLife
Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spider
Zhang, G., Wang, Y., Jiang, H., Wang, Y.
10.1101/2024.07.31.605936 — Posted: 2024-07-31 — Discussion: 2025-04-03  GigaScience
Healthy microbiome - moving towards functional interpretation
Zielinska, K., Rudnicki, W., Kosciolek, T., Labaj, P. P.
10.1101/2023.12.04.569909 — Posted: 2023-12-05 — Discussion: 2025-04-03  GigaScience
CompactTree: A lightweight header-only C++ library for ultra-large phylogenetics
Moshiri, N.
10.1101/2024.07.15.603593 — Posted: 2024-07-17 — Discussion: 2025-03-23  Gigabyte
SqueezeCall: Nanopore basecalling using a Squeezeformer network
Zhu, Z.
10.1101/2025.01.21.634194 — Posted: 2025-01-25 — Discussion: 2025-03-15  Gigabyte
Celldetective: an AI-enhanced image analysis toolfor unraveling dynamic cell interactions
Torro, R., Diaz Bello, B., El Arawi, D., Ammer, L., Chames, P., Sengupta, K., Limozin, L.
10.1101/2024.03.15.585250 — Posted: 2024-03-17 — Discussion: 2025-03-11  eLife
Exploring the repository of de novo designed bifunctional antimicrobial peptides through deep learning
Dong, R., Liu, R., Liu, Z., Liu, Y., Zhao, G., Li, H., Hou, S., Ma, X., Kang, H., Liu, J., Guo, F., Zhao, P., Wang, J., Wang, C., Wu, X., Ye, S., Zhu, C.
10.1101/2024.02.23.581845 — Posted: 2025-01-08 — Discussion: 2025-03-03  eLife
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M., Li, S.
10.1101/2025.01.20.634002 — Posted: 2025-01-24 — Discussion: 2025-03-03  GigaScience
xRead: a coverage-guided approach for scalable construction of read overlapping graph
Kong, T., Liu, B., Wang, Y.
10.1101/2023.05.23.541864 — Posted: 2023-05-24 — Discussion: 2025-03-03  GigaScience

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