bioRxiv/medRxiv TRiP Review Activity

510 Reviews — All Partners — Bioinformatics

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Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions
Verneret, M., Le, V. A., Faraut, T., Turpin, J., Lerat, E.
10.1101/2024.09.25.614865 — Posted: 2024-09-26 — Discussion: 2025-05-21  Peer Community In
Pathway activation model for personalized prediction of drug synergy
Trac, Q. T., Huang, Y., Erkers, T., Östling, P., Bohlin, A., Osterroos, A., Vesterlund, M., Jafari, R., Siavelis, I., Backvall, H., Kiviluoto, S., Orre, L., Rantalainen, M., Lehtiö, J., Lehmann, S., Kallioniemi, O., Pawitan, Y., Vu, T. N.
10.1101/2024.06.05.597583 — Posted: 2024-06-08 — Discussion: 2025-05-20  eLife
DICE: Fast and Accurate Distance-Based Reconstruction of Single-Cell Copy Number Phylogenies
Weiner, S., Bansal, M. S.
10.1101/2024.06.03.597037 — Posted: 2024-06-04 — Discussion: 2025-05-20  EMBO Press
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Osorio, D., Tekpli, X., Kristensen, V. N., Kuijjer, M. L.
10.1101/2022.03.31.486602 — Posted: 2022-04-01 — Discussion: 2025-05-09  eLife
AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface
Zhou, Y., Liu, W., Huang, Z., Gou, Y., Liu, S., Jiang, L., Yang, Y., Huang, J.
10.1101/2024.11.12.623267 — Posted: 2024-11-17 — Discussion: 2025-05-09  eLife
Defining the limits of plant chemical space: challenges and estimations
Hart, C. E., Gadiya, Y., Kind, T., Krettler, C. A., Gaetz, M., Misra, B. B., Healey, D., Allen, A., Colluru, V., Domingo-Fernandez, D.
10.1101/2025.01.08.631938 — Posted: 2025-01-13 — Discussion: 2025-05-06  GigaScience
RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species
Kainer, D., Lane, M., Sullivan, K. A., Miller, J. I., Cashman, M., Morgan, M., Cliff, A., Romero, J., Walker, A., Blair, D. D., Chhetri, H., Wang, Y., Pavicic, M., Furches, A., Noshay, J., Drake, M., Landry, N., Ireland, A., Missaoui, A., Kang, Y., Sedbrook, J., Dehal, P., Canon, S., Jacobson, D. A.
10.1101/2024.07.17.603975 — Posted: 2024-07-19 — Discussion: 2025-05-06  GigaScience
Network-based anomaly detection algorithm reveals proteins with major roles in human tissues
Kagan, D., Jubran, J., Yeger-Lotem, E., Fire, M.
10.1101/2023.12.19.572354 — Posted: 2023-12-20 — Discussion: 2025-04-28  GigaScience
Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings
Deserno, M., Bozek, K.
10.1101/2025.02.14.638285 — Posted: 2025-02-19 — Discussion: 2025-04-24  eLife
Latent representation of single-cell transcriptomes enables algebraic operations on cellular phenotypes
Sengupta, D., Nelson, C. C., Bhattacharya, N., Rockstroh, A., Roquilly, A., Hollier, B., Ahuja, G., Kumar, H., Poschmann, J., Lehman, M., Thomas, S. K., Deshpande, S. S., Chawla, S., Solomon, P., Fourgeux, C.
10.1101/2022.12.28.522060 — Posted: 2022-12-30 — Discussion: 2025-04-17  eLife

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