bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Benchmarking tRNA-Seq quantification approaches by realistic tRNA-Seq data simulation identifies two novel approaches with higher accuracy
Smith, T. S., Monti, M., Willis, A. E., Kalmar, L.
10.1101/2023.12.13.571582 — Posted: 2023-12-14 — Discussion: 2024-10-07  eLife
HairSplitter: haplotype assembly from long, noisy reads
Faure, R., Lavenier, D., Flot, J.-F.
10.1101/2024.02.13.580067 — Posted: 2024-02-14 — Discussion: 2024-10-02  Peer Community In
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks
De Waele, G., Menschaert, G., Waegeman, W.
10.1101/2023.09.28.559916 — Posted: 2023-09-29 — Discussion: 2024-10-02  eLife
A comprehensive dimensional reduction framework to learn single-cell phenotypic topology uncovers T cell diversity
Sidarta-Oliveira, D., Velloso, L. A.
10.1101/2022.03.14.484134 — Posted: 2022-03-17 — Discussion: 2024-09-30  eLife
Establishing comprehensive quaternary structural proteomes from genome sequence
Catoiu, E. A., Mih, N., Lu, M., Palsson, B. O.
10.1101/2024.04.24.590993 — Posted: 2024-04-28 — Discussion: 2024-09-25  eLife
An image segmentation method based on the spatial correlation coefficient of Local Moran's I
David, C., Giber, K., Kerti-Szigeti, K., Kollo, M., Nusser, Z., Acsady, L.
10.1101/2023.05.02.539063 — Posted: 2023-05-02 — Discussion: 2024-09-12  eLife
A highly scalable approach to topic modelling in single-cell data by approximate pseudobulk projection
Subedi, S., Sumida, T. S., Park, Y.
10.1101/2024.02.21.581497 — Posted: 2024-02-23 — Discussion: 2024-09-10  EMBO Press
Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data.
Gabriel, A. A., Racle, J., Falquet, M., Jandus, C., Gfeller, D.
10.1101/2023.10.11.561826 — Posted: 2023-10-14 — Discussion: 2024-09-09  eLife
Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
Hall, M. B., Wick, R. R., Judd, L. M., Nguyen, A. N. T., Steinig, E. J., Xie, O., Davies, M. R., Seemann, T., Stinear, T. P., Coin, L. J. M.
10.1101/2024.03.15.585313 — Posted: 2024-03-16 — Discussion: 2024-09-05  eLife
RiboSnake - a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
Doerr, A.-K., Welling, J., Doerr, A., Gosch, J., Moehlen, H., Schmithausen, R., Kehrmann, J., Meyer, F., Kraiselburd, I.
10.1101/2024.08.06.606757 — Posted: 2024-08-08 — Discussion: 2024-09-04  Gigabyte

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