bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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AI-enabled Alkaline-resistant Evolution of Protein to Apply in Mass Production
Kang, L., Wu, B., Zhou, B., Tan, P., Kang, Y., Yan, Y., Zong, Y., Li, S., Liu, Z., Hong, L.
10.1101/2024.09.04.611192 — Posted: 2024-09-08 — Discussion: 2025-02-07  eLife
Knowledge Graph-based Thought: a knowledge graph enhanced LLMs framework for pan-cancer question answering
Feng, Y., Zhou, L., Zheng, Y., He, R., Ma, C., Li, Y.
10.1101/2024.04.17.589873 — Posted: 2024-04-20 — Discussion: 2025-02-04  GigaScience
Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats
Mardinoglu, A., Yang, H., Zhang, C., Kim, W., Shi, M., Kiliclioglu, M., Bayram, C., Bolar, I., Tozlu, O. O., Baba, C., Yuksel, N., Yildirim, S., Iqbal, S., Sebhaoui, J., Hacimuftuoglu, A., Uhlen, M., Boren, J., Turkez, H.
10.1101/2024.04.22.590583 — Posted: 2024-04-28 — Discussion: 2025-01-29  eLife
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure
Ji, Y., Shang, J., Guan, J., Zou, W., Liao, H., Tang, X., Sun, Y.
10.1101/2024.07.03.602011 — Posted: 2024-07-06 — Discussion: 2025-01-05  GigaScience
Expression quantitative trait locus mapping in recombinant gametes using single nucleus RNA sequencing
Parker, M. T., Amar, S., Campoy, J. A., Krause, K., Tusso, S., Marek, M., Huettel, B., Schneeberger, K.
10.1101/2024.08.02.606310 — Posted: 2024-08-06 — Discussion: 2025-01-02  Review Commons
NeuroVar: An Open-source Tool for Gene Expression and Variation Data Visualization for Biomarkers of Neurological Diseases
Aribi, H. B., Abassi, N., Awe, O. I.
10.1101/2024.08.21.609056 — Posted: 2024-08-22 — Discussion: 2024-12-26  Gigabyte
MGPfactXMBD: A Model-Based Factorization Method for scRNA Data Unveils Bifurcating Transcriptional Modules Underlying Cell Fate Determination
Ren, J., Zhou, Y., Hu, Y., Yang, J., Fang, H., Lyu, X., Guo, J., Shi, X., Li, Q.
10.1101/2024.04.02.587768 — Posted: 2024-04-04 — Discussion: 2024-12-18  eLife
CAT Bridge: an efficient toolkit for compound-transcript association mining from multi-omics data
Yang, B., Meng, T., Wang, X., Li, J., Zhao, S., Wang, Y., Yi, S., Zhou, Y., Zhang, Y., Li, L., Guo, L.
10.1101/2024.01.21.576587 — Posted: 2024-01-24 — Discussion: 2024-12-05  GigaScience
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
Zhang, D., Yu, N., Li, W., Sun, X., Zou, Q., Li, X., Yuan, Z., Zhang, W., Gao, R.
10.1101/2024.02.22.581503 — Posted: 2024-02-24 — Discussion: 2024-12-05  GigaScience
demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs
Lynch, M. P., Wang, Y., Gatto, L., Culhane, A. C.
10.1101/2024.04.22.590526 — Posted: 2024-04-26 — Discussion: 2024-12-05  GigaScience

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