bioRxiv/medRxiv TRiP Review Activity

522 Reviews — All Partners — Bioinformatics

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Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease
Mahajan, A., Ratti, F., Wang, B., El-Samad, H., Kaufman, J. H., Gopalakrishnan, V.
10.1101/2025.05.14.654062 — Posted: 2025-05-18 — Discussion: 2025-09-23  eLife
HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
Rio, S., Abdallah, S., Durand, T., DHont, A., Garsmeur, O.
10.1101/2025.03.14.642807 — Posted: 2025-03-17 — Discussion: 2025-09-21  Peer Community In
Restoring data balance via generative models of T-cell receptors for antigen-binding prediction
Loffredo, E., Pastore, M., Cocco, S., Monasson, R.
10.1101/2024.07.10.602897 — Posted: 2024-07-15 — Discussion: 2025-09-15  eLife
The De-Modifier: a tool for screening modification-induced alternate peptide taxonomy in palaeoproteomics
Evans, M.
10.1101/2025.01.09.632126 — Posted: 2025-01-13 — Discussion: 2025-09-15  Peer Community In
Identification of type 2 diabetes- and obesity-associated human β-cells using deep transfer learning
Roy, G., Syed, R., Lazaro, O., Robertson, S., McCabe, S. D., Rodriguez, D., Mawla, A. M., Johnson, T. S., Kalwat, M. A.
10.1101/2024.01.18.576260 — Posted: 2024-01-23 — Discussion: 2025-09-02  eLife
Studying cis-regulatory heterogeneity in single-cells at allelic resolution
Petrova, V., Niu, M., Vierbuchen, T., Wong, E. S.
10.1101/2025.04.16.649227 — Posted: 2025-04-17 — Discussion: 2025-08-11  Review Commons
EnVhog: an extended view of the viral protein space on Earth
Bucio, R. E. P., Enault, F., Galiez, C.
10.1101/2024.06.25.600602 — Posted: 2024-06-27 — Discussion: 2025-08-11  Peer Community In
SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework
Hua, Y., Weng, L., Zhao, F., Rambow, F.
10.1101/2024.08.01.606144 — Posted: 2024-08-04 — Discussion: 2025-08-04  GigaScience
Chevreul: An R Bioconductor Package for Exploratory Analysis of Full-Length Single Cell Sequencing
Stachelek, K., Bhat, B., Cobrinik, D.
10.1101/2025.05.27.656486 — Posted: 2025-06-01 — Discussion: 2025-07-30  Gigabyte
The Lipocone Superfamily: A Unifying Theme In Metabolism Of Lipids, Peptidoglycan And Exopolysaccharides, Inter-Organismal Conflicts And Immunity
Burroughs, A. M., Nicastro, G. G., Aravind, L.
10.1101/2025.01.14.632903 — Posted: 2025-01-19 — Discussion: 2025-07-18  eLife

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