bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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CompactTree: A lightweight header-only C++ library for ultra-large phylogenetics
Moshiri, N.
10.1101/2024.07.15.603593 — Posted: 2024-07-17 — Discussion: 2025-03-23  Gigabyte
Generative modeling for RNA splicing predictions and design
Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P., Gardner, J. R., Barash, Y.
10.1101/2025.01.20.633986 — Posted: 2025-01-24 — Discussion: 2025-03-19  eLife
SqueezeCall: Nanopore basecalling using a Squeezeformer network
Zhu, Z.
10.1101/2025.01.21.634194 — Posted: 2025-01-25 — Discussion: 2025-03-15  Gigabyte
Celldetective: an AI-enhanced image analysis toolfor unraveling dynamic cell interactions
Torro, R., Diaz Bello, B., El Arawi, D., Ammer, L., Chames, P., Sengupta, K., Limozin, L.
10.1101/2024.03.15.585250 — Posted: 2024-03-17 — Discussion: 2025-03-11  eLife
Raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A., Cheng, L.
10.1101/2024.01.11.575207 — Posted: 2024-01-11 — Discussion: 2025-03-06  eLife
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M., Li, S.
10.1101/2025.01.20.634002 — Posted: 2025-01-24 — Discussion: 2025-03-03  GigaScience
Exploring the repository of de novo designed bifunctional antimicrobial peptides through deep learning
Dong, R., Liu, R., Liu, Z., Liu, Y., Zhao, G., Li, H., Hou, S., Ma, X., Kang, H., Liu, J., Guo, F., Zhao, P., Wang, J., Wang, C., Wu, X., Ye, S., Zhu, C.
10.1101/2024.02.23.581845 — Posted: 2025-01-08 — Discussion: 2025-03-03  eLife
xRead: a coverage-guided approach for scalable construction of read overlapping graph
Kong, T., Liu, B., Wang, Y.
10.1101/2023.05.23.541864 — Posted: 2023-05-24 — Discussion: 2025-03-03  GigaScience
Testing nonparametrically for dependence between nonstationary time series with very few replicates
Yuan, A. E., Shou, W.
10.1101/2023.03.13.531689 — Posted: 2023-03-14 — Discussion: 2025-02-24  eLife
A Novel Imaging Mass Spectrometry Computational Tool for Biomedical Discovery: Untargeted pixel-by-pixel imaging of Metabolite Ratio Pairs
Cheng, H., Miller, D., Southwell, N., Fischer, J., Salbaum, M., Kappen, C., Hu, F., Yang, C., Gross, S., D'Aurelio, M., Chen, Q.
10.1101/2024.01.10.575105 — Posted: 2024-01-12 — Discussion: 2025-02-19  eLife

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