bioRxiv/medRxiv TRiP Review Activity

122 Reviews — eLife — Bioinformatics

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PPIscreenML: Structure-based screening for protein-protein interactions using AlphaFold
Mischley, V., Maier, J., Chen, J., Karanicolas, J.
10.1101/2024.03.16.585347 — Posted: 2024-03-17 — Discussion: 2024-07-04  eLife
MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations
Tiemann, J. K. S., Szczuka, M., Bouarroudj, L., Oussaren, M., Garcia, S., Howard, R. J., Delemotte, L., Lindahl, E., Baaden, M., Lindorff-Larsen, K., Chavent, M., Poulain, P.
10.1101/2023.05.02.538537 — Posted: 2023-05-02 — Discussion: 2024-06-28  eLife
Circulating Small Extracellular Vesicle RNA Profiling for the Detection of T1a stage Colorectal Cancer and Precancerous Advanced Adenoma
Min, L., Bu, F., Meng, J., Liu, X., Guo, Q., Zhao, L., Li, Z., Li, X., Zhu, S., Zhang, S.
10.1101/2023.06.04.543604 — Posted: 2023-06-06 — Discussion: 2024-06-27  eLife
H3-OPT: Accurate prediction of CDR-H3 loop structures of antibodies with deep learning
Tian, B., Chen, H., Fan, X., Zhu, S., Pei, Y., Zhang, X., Zhang, X., Liu, L., Qian, F.
10.1101/2023.08.19.553933 — Posted: 2023-08-21 — Discussion: 2024-05-30  eLife
Single cell transcriptome analysis of cavernous tissues reveals the key roles of pericytes in diabetic erectile dysfunction
Bae, S.-G., Yin, G.-N., Ock, J., Suh, J.-K., Ryu, J.-K., Park, J.
10.1101/2023.05.25.542355 — Posted: 2023-05-26 — Discussion: 2024-05-02  eLife
Phantasus: web-application for visual and interactive gene expression analysis
Kleverov, M., Zenkova, D., Kamenev, V., Sablina, M., Artyomov, M., Sergushichev, A.
10.1101/2022.12.10.519861 — Posted: 2022-12-12 — Discussion: 2024-04-23  eLife
Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions
Zhang, P., Bang, S., Cai, M., Lee, H.
10.1101/2023.04.12.536635 — Posted: 2023-04-14 — Discussion: 2024-04-23  eLife
Spotless: a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
Sang-aram, C., Browaeys, R., Seurinck, R., Saeys, Y.
10.1101/2023.03.22.533802 — Posted: 2023-03-24 — Discussion: 2024-04-04  eLife
Genome-scale annotation of protein binding sites via language model and geometric deep learning
Yuan, Q., Tian, C., Yang, Y.
10.1101/2023.11.02.565344 — Posted: 2023-11-05 — Discussion: 2024-03-25  eLife
Deep learning for rapid analysis of cell divisions in vivo during epithelial morphogenesis and repair
Turley, J. M., Chenchiah, I. V., Martin, P., Liverpool, T. B., Weavers, H.
10.1101/2023.03.20.533343 — Posted: 2023-03-23 — Discussion: 2024-03-12  eLife

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