bioRxiv/medRxiv TRiP Review Activity

122 Reviews — eLife — Bioinformatics

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An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks
De Waele, G., Menschaert, G., Waegeman, W.
10.1101/2023.09.28.559916 — Posted: 2023-09-29 — Discussion: 2024-10-02  eLife
A comprehensive dimensional reduction framework to learn single-cell phenotypic topology uncovers T cell diversity
Sidarta-Oliveira, D., Velloso, L. A.
10.1101/2022.03.14.484134 — Posted: 2022-03-17 — Discussion: 2024-09-30  eLife
Establishing comprehensive quaternary structural proteomes from genome sequence
Catoiu, E. A., Mih, N., Lu, M., Palsson, B. O.
10.1101/2024.04.24.590993 — Posted: 2024-04-28 — Discussion: 2024-09-25  eLife
An image segmentation method based on the spatial correlation coefficient of Local Moran's I
David, C., Giber, K., Kerti-Szigeti, K., Kollo, M., Nusser, Z., Acsady, L.
10.1101/2023.05.02.539063 — Posted: 2023-05-02 — Discussion: 2024-09-12  eLife
Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data.
Gabriel, A. A., Racle, J., Falquet, M., Jandus, C., Gfeller, D.
10.1101/2023.10.11.561826 — Posted: 2023-10-14 — Discussion: 2024-09-09  eLife
Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
Hall, M. B., Wick, R. R., Judd, L. M., Nguyen, A. N. T., Steinig, E. J., Xie, O., Davies, M. R., Seemann, T., Stinear, T. P., Coin, L. J. M.
10.1101/2024.03.15.585313 — Posted: 2024-03-16 — Discussion: 2024-09-05  eLife
Identifying images in the biology literature that are problematic for people with a color-vision deficiency
Stevens, H. P., Winegar, C. V., Oakley, A. F., Piccolo, S. R.
10.1101/2023.11.29.569308 — Posted: 2023-11-30 — Discussion: 2024-08-29  eLife
ImmCellTyper: an integrated computational pipeline for systematic mining of Mass Cytometry data to assist deep immune profiling
Sun, J., Choy, D., Sompairac, N., Jamshidi, S., Mishto, M., Kordasti, S.
10.1101/2024.01.15.575790 — Posted: 2024-01-17 — Discussion: 2024-08-13  eLife
Alleviating cell-free DNA sequencing biases with optimal transport
Passemiers, A., Jatsenko, T., Vanderstichele, A., Busschaert, P., Coosemans, A., Timmerman, D., Lambrechts, D., Raimondi, D., Vermeesch, J. R., Moreau, Y.
10.1101/2024.04.04.588204 — Posted: 2024-04-07 — Discussion: 2024-08-02  eLife
Computational Engineering of a Therapeutic Antibody to Inhibit Multiple Mutants of HER2 Without Compromising Inhibition of the Canonical HER2
Peled, S., Guez-Haddad, J., Zur Biton, N., Nimrod, G., Fischman, S., Fastman, Y., Ofran, Y.
10.1101/2023.07.21.550003 — Posted: 2023-07-25 — Discussion: 2024-08-01  eLife

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