bioRxiv/medRxiv TRiP Review Activity

138 Reviews — eLife — Bioinformatics

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AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface
Zhou, Y., Liu, W., Huang, Z., Gou, Y., Liu, S., Jiang, L., Yang, Y., Huang, J.
10.1101/2024.11.12.623267 — Posted: 2024-11-17 — Discussion: 2025-05-09  eLife
Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings
Deserno, M., Bozek, K.
10.1101/2025.02.14.638285 — Posted: 2025-02-19 — Discussion: 2025-04-24  eLife
Latent representation of single-cell transcriptomes enables algebraic operations on cellular phenotypes
Sengupta, D., Nelson, C. C., Bhattacharya, N., Rockstroh, A., Roquilly, A., Hollier, B., Ahuja, G., Kumar, H., Poschmann, J., Lehman, M., Thomas, S. K., Deshpande, S. S., Chawla, S., Solomon, P., Fourgeux, C.
10.1101/2022.12.28.522060 — Posted: 2022-12-30 — Discussion: 2025-04-17  eLife
Decoding Liver Cancer Prognosis: From Multi-omics Subtypes, Prognostic Models to Single Cell Validation
Wang, Y., Wu, Y., Zhang, H., Zhou, X., Song, A., Qiu, H., Yuan, X., Xiong, H., Zou, Y.
10.1101/2024.11.04.610003 — Posted: 2024-11-06 — Discussion: 2025-04-15  eLife
Hidden GPCR structural transitions addressed by multiple walker supervised molecular dynamics (mwSuMD)
Deganutti, G., Pipito, L., Rujan, R. M., Weizmann, T., Griffin, P., Ciancetta, A., Moro, S., Reynolds, C. A.
10.1101/2022.10.26.513870 — Posted: 2022-10-27 — Discussion: 2025-04-10  eLife
Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
Uematsu, M., Baskin, J. M.
10.1101/2023.04.12.536413 — Posted: 2023-04-13 — Discussion: 2025-04-04  eLife
Exploring the repository of de novo designed bifunctional antimicrobial peptides through deep learning
Dong, R., Liu, R., Liu, Z., Liu, Y., Zhao, G., Li, H., Hou, S., Ma, X., Kang, H., Liu, J., Guo, F., Zhao, P., Wang, J., Wang, C., Wu, X., Ye, S., Zhu, C.
10.1101/2024.02.23.581845 — Posted: 2025-01-08 — Discussion: 2025-03-03  eLife
A Novel Imaging Mass Spectrometry Computational Tool for Biomedical Discovery: Untargeted pixel-by-pixel imaging of Metabolite Ratio Pairs
Cheng, H., Miller, D., Southwell, N., Fischer, J., Salbaum, M., Kappen, C., Hu, F., Yang, C., Gross, S., D'Aurelio, M., Chen, Q.
10.1101/2024.01.10.575105 — Posted: 2024-01-12 — Discussion: 2025-02-19  eLife
AI-enabled Alkaline-resistant Evolution of Protein to Apply in Mass Production
Kang, L., Wu, B., Zhou, B., Tan, P., Kang, Y., Yan, Y., Zong, Y., Li, S., Liu, Z., Hong, L.
10.1101/2024.09.04.611192 — Posted: 2024-09-08 — Discussion: 2025-02-07  eLife
Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats
Mardinoglu, A., Yang, H., Zhang, C., Kim, W., Shi, M., Kiliclioglu, M., Bayram, C., Bolar, I., Tozlu, O. O., Baba, C., Yuksel, N., Yildirim, S., Iqbal, S., Sebhaoui, J., Hacimuftuoglu, A., Uhlen, M., Boren, J., Turkez, H.
10.1101/2024.04.22.590583 — Posted: 2024-04-28 — Discussion: 2025-01-29  eLife

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