bioRxiv/medRxiv TRiP Review Activity

128 Reviews — eLife — Bioinformatics

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Single cell transcriptome analysis of cavernous tissues reveals the key roles of pericytes in diabetic erectile dysfunction
Bae, S.-G., Yin, G.-N., Ock, J., Suh, J.-K., Ryu, J.-K., Park, J.
10.1101/2023.05.25.542355 — Posted: 2023-05-26 — Discussion: 2024-05-02  eLife
Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions
Zhang, P., Bang, S., Cai, M., Lee, H.
10.1101/2023.04.12.536635 — Posted: 2023-04-14 — Discussion: 2024-04-23  eLife
Phantasus: web-application for visual and interactive gene expression analysis
Kleverov, M., Zenkova, D., Kamenev, V., Sablina, M., Artyomov, M., Sergushichev, A.
10.1101/2022.12.10.519861 — Posted: 2022-12-12 — Discussion: 2024-04-23  eLife
Spotless: a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
Sang-aram, C., Browaeys, R., Seurinck, R., Saeys, Y.
10.1101/2023.03.22.533802 — Posted: 2023-03-24 — Discussion: 2024-04-04  eLife
Genome-scale annotation of protein binding sites via language model and geometric deep learning
Yuan, Q., Tian, C., Yang, Y.
10.1101/2023.11.02.565344 — Posted: 2023-11-05 — Discussion: 2024-03-25  eLife
Deep learning for rapid analysis of cell divisions in vivo during epithelial morphogenesis and repair
Turley, J. M., Chenchiah, I. V., Martin, P., Liverpool, T. B., Weavers, H.
10.1101/2023.03.20.533343 — Posted: 2023-03-23 — Discussion: 2024-03-12  eLife
Protein language model embedded geometric graphs power inter-protein contact prediction
Si, Y., Yan, C.
10.1101/2023.01.07.523121 — Posted: 2023-01-08 — Discussion: 2024-03-11  eLife
A novel machine learning algorithm picks proteome signature to specifically identify cancer exosomes
Li, B., Kugeratski, F. G., Kalluri, R.
10.1101/2023.07.18.549557 — Posted: 2023-07-19 — Discussion: 2024-03-01  eLife
voyAGEr: free web interface for the analysis of age-related gene expression alterations in human tissues
Schneider, A. L., Saraiva-Agostinho, N., Barbosa-Morais, N. L.
10.1101/2022.12.22.521681 — Posted: 2022-12-23 — Discussion: 2024-02-29  eLife
Sensitive remote homology search by local alignment of small positional embeddings from protein language models
Johnson, S. R., Peshwa, M., Sun, Z.
10.1101/2023.07.26.550718 — Posted: 2023-07-29 — Discussion: 2024-02-21  eLife

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