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132 Reviews — eLife — Bioinformatics

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Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Osorio, D., Tekpli, X., Kristensen, V. N., Kuijjer, M. L.
10.1101/2022.03.31.486602 — Posted: 2022-04-01 — Discussion: 2025-05-09  eLife
AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface
Zhou, Y., Liu, W., Huang, Z., Gou, Y., Liu, S., Jiang, L., Yang, Y., Huang, J.
10.1101/2024.11.12.623267 — Posted: 2024-11-17 — Discussion: 2025-05-09  eLife
Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings
Deserno, M., Bozek, K.
10.1101/2025.02.14.638285 — Posted: 2025-02-19 — Discussion: 2025-04-24  eLife
Latent representation of single-cell transcriptomes enables algebraic operations on cellular phenotypes
Sengupta, D., Nelson, C. C., Bhattacharya, N., Rockstroh, A., Roquilly, A., Hollier, B., Ahuja, G., Kumar, H., Poschmann, J., Lehman, M., Thomas, S. K., Deshpande, S. S., Chawla, S., Solomon, P., Fourgeux, C.
10.1101/2022.12.28.522060 — Posted: 2022-12-30 — Discussion: 2025-04-17  eLife
Decoding Liver Cancer Prognosis: From Multi-omics Subtypes, Prognostic Models to Single Cell Validation
Wang, Y., Wu, Y., Zhang, H., Zhou, X., Song, A., Qiu, H., Yuan, X., Xiong, H., Zou, Y.
10.1101/2024.11.04.610003 — Posted: 2024-11-06 — Discussion: 2025-04-15  eLife
Hidden GPCR structural transitions addressed by multiple walker supervised molecular dynamics (mwSuMD)
Deganutti, G., Pipito, L., Rujan, R. M., Weizmann, T., Griffin, P., Ciancetta, A., Moro, S., Reynolds, C. A.
10.1101/2022.10.26.513870 — Posted: 2022-10-27 — Discussion: 2025-04-10  eLife
Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
Uematsu, M., Baskin, J. M.
10.1101/2023.04.12.536413 — Posted: 2023-04-13 — Discussion: 2025-04-04  eLife
Celldetective: an AI-enhanced image analysis toolfor unraveling dynamic cell interactions
Torro, R., Diaz Bello, B., El Arawi, D., Ammer, L., Chames, P., Sengupta, K., Limozin, L.
10.1101/2024.03.15.585250 — Posted: 2024-03-17 — Discussion: 2025-03-11  eLife
Exploring the repository of de novo designed bifunctional antimicrobial peptides through deep learning
Dong, R., Liu, R., Liu, Z., Liu, Y., Zhao, G., Li, H., Hou, S., Ma, X., Kang, H., Liu, J., Guo, F., Zhao, P., Wang, J., Wang, C., Wu, X., Ye, S., Zhu, C.
10.1101/2024.02.23.581845 — Posted: 2025-01-08 — Discussion: 2025-03-03  eLife
Testing nonparametrically for dependence between nonstationary time series with very few replicates
Yuan, A. E., Shou, W.
10.1101/2023.03.13.531689 — Posted: 2023-03-14 — Discussion: 2025-02-24  eLife

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