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122 Reviews — eLife — Bioinformatics

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A Novel Imaging Mass Spectrometry Computational Tool for Biomedical Discovery: Untargeted pixel-by-pixel imaging of Metabolite Ratio Pairs
Cheng, H., Miller, D., Southwell, N., Fischer, J., Salbaum, M., Kappen, C., Hu, F., Yang, C., Gross, S., D'Aurelio, M., Chen, Q.
10.1101/2024.01.10.575105 — Posted: 2024-01-12 — Discussion: 2025-02-19  eLife
AI-enabled Alkaline-resistant Evolution of Protein to Apply in Mass Production
Kang, L., Wu, B., Zhou, B., Tan, P., Kang, Y., Yan, Y., Zong, Y., Li, S., Liu, Z., Hong, L.
10.1101/2024.09.04.611192 — Posted: 2024-09-08 — Discussion: 2025-02-07  eLife
Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats
Mardinoglu, A., Yang, H., Zhang, C., Kim, W., Shi, M., Kiliclioglu, M., Bayram, C., Bolar, I., Tozlu, O. O., Baba, C., Yuksel, N., Yildirim, S., Iqbal, S., Sebhaoui, J., Hacimuftuoglu, A., Uhlen, M., Boren, J., Turkez, H.
10.1101/2024.04.22.590583 — Posted: 2024-04-28 — Discussion: 2025-01-29  eLife
MGPfactXMBD: A Model-Based Factorization Method for scRNA Data Unveils Bifurcating Transcriptional Modules Underlying Cell Fate Determination
Ren, J., Zhou, Y., Hu, Y., Yang, J., Fang, H., Lyu, X., Guo, J., Shi, X., Li, Q.
10.1101/2024.04.02.587768 — Posted: 2024-04-04 — Discussion: 2024-12-18  eLife
Single-Cell and Spatial Transcriptomic Analyses Reveals the Dynamic Transcript Profiles of Myocardial Lymphangiogenesis post Myocardial Infarction
Jiaqi, H., Zhang, D., Song, H., Liu, Z., Liu, D., Zhang, X., Zhao, X., Zhang, Y., Liu, J., Xu, J., Yan, C., Han, Y.
10.1101/2024.06.10.598235 — Posted: 2024-06-11 — Discussion: 2024-11-25  eLife
Statistical analysis supports pervasive RNA subcellular localization and alternative 3' UTR regulation
Bierman, R., Salzman, J.
10.1101/2022.10.26.513902 — Posted: 2022-10-27 — Discussion: 2024-11-25  eLife
A multi-gene predictive model for the radiation sensitivity of nasopharyngeal carcinoma based on machine learning
Li, K., Liang, J., Li, N., Fang, J., Zhou, X., zhang, j., Lin, A., Luo, P., Meng, H.
10.1101/2024.06.10.598247 — Posted: 2024-06-11 — Discussion: 2024-11-05  eLife
Coenzyme-Protein Interactions since Early Life
Sanchez Rocha, A. C., Makarov, M., Pravda, L., Novotny, M., Hlouchova, K.
10.1101/2023.10.28.563965 — Posted: 2023-11-01 — Discussion: 2024-10-14  eLife
Unveiling the influence of tumor and immune signatures on immune checkpoint therapy in advanced lung cancer
Kim, N., Park, S., Jo, A., Eum, H. H., Kim, H. K., Lee, K., Cho, J. H., Ku, B. M., Jung, H. A., Sun, J.-M., Lee, S.-H., Ahn, J. S., Lee, J.-I., Choi, J. W., Jeong, D., Na, M., Kang, H., Kim, J. Y., Choi, J. K., Lee, H.-O., Ahn, M.-J.
10.1101/2024.04.15.589544 — Posted: 2024-04-20 — Discussion: 2024-10-14  eLife
Benchmarking tRNA-Seq quantification approaches by realistic tRNA-Seq data simulation identifies two novel approaches with higher accuracy
Smith, T. S., Monti, M., Willis, A. E., Kalmar, L.
10.1101/2023.12.13.571582 — Posted: 2023-12-14 — Discussion: 2024-10-07  eLife

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