bioRxiv/medRxiv TRiP Review Activity

478 Reviews — All Partners — Bioinformatics

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OrtSuite - from genomes to prediction of microbial interactions within targeted ecosystem processes
Saraiva, J. P., Bartholomäus, A., Kallies, R., Gomes, M., Fleming Bicalho, M. V., Vogt, C., Chatzinotas, A., Stadler, P. F., Dias, O., Nunes da Rocha, U.
10.1101/2021.06.04.447094 — Posted: 2021-06-07 — Discussion: 2021-10-27  EMBO Press
Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.
Desvillechabrol, D., Bouchier, C., Kennedy, S., Cokelaer, T.
10.1101/092478 — Posted: 2016-12-08 — Discussion: 2021-10-26  GigaScience
CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes
Djekidel, M. N., Rosikiewicz, W., Peng, J. C., Kanneganti, T.-D., Hui, Y., Jin, H., Hedges, D., Schreiner, P., Fan, Y., Wu, G., Xu, B.
10.1101/2021.05.14.444026 — Posted: 2021-05-16 — Discussion: 2021-10-24  Review Commons
A survey of optimal strategy for signature-based drug repositioning and an application to liver cancer
Yang, C., Chen, M., Wang, S., Qian, R., Huang, X., Wang, J., Liu, Z., Qin, W.-X., Wang, C., Hang, H., Wang, H.
10.1101/2021.06.29.450305 — Posted: 2021-06-30 — Discussion: 2021-10-22  eLife
Atria: An Ultra-fast and Accurate Trimmer for Adapter and Quality Trimming
Chuan, J., Zhou, A., Hale, L. R., He, M., Li, X.
10.1101/2021.09.07.459340 — Posted: 2021-09-09 — Discussion: 2021-10-10  Gigabyte
MCGA: a multi-strategy conditional gene-based association framework integrating with isoform-level expression profiles reveals new susceptible and druggable candidate genes of schizophrenia
Li, X., Jiang, L., Xue, C., Li, M. J., Li, M.
10.1101/2021.06.08.447608 — Posted: 2021-06-09 — Discussion: 2021-09-27  eLife
Positional SHAP for Interpretation of Deep Learning Models Trained from Biological Sequences
Dickinson, Q., Meyer, J. G.
10.1101/2021.03.04.433939 — Posted: 2021-03-05 — Discussion: 2021-09-15  Review Commons
Open Humans: A platform for participant-centered research and personal data exploration
Greshake Tzovaras, B., Arvai, K., Dulaney, M., Estrada-Galinanes, V., Gunderson, B., Head, T., Lewis, D., Nov, O., Shaer, O., Bobe, J., Price Ball, M.
10.1101/469189 — Posted: 2018-11-14 — Discussion: 2021-09-13  GigaScience
Scalable Analysis of Multi-Modal Biomedical Data
Smith, J. M., Shi, Y., Benedikt, M., Nikolic, M.
10.1101/2020.12.14.422781 — Posted: 2020-12-15 — Discussion: 2021-09-12  GigaScience
RNA splicing programs define tissue compartments and cell types at single cell resolution
Olivieri, J. E., Dehghannasiri, R., Wang, P., Jang, S., de Morree, A., Tan, S. Y., Ming, J., Wu, A. R., Tabula Sapiens Consortium, , Quake, S. R., Krasnow, M. A., Salzman, J.
10.1101/2021.05.01.442281 — Posted: 2021-05-02 — Discussion: 2021-09-03  eLife

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