bioRxiv/medRxiv TRiP Review Activity

520 Reviews — All Partners — Bioinformatics

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Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning
Teng, H., Hall, M. B., Duarte, T., Cao, M. D., Coin, L.
10.1101/179531 — Posted: 2017-08-23 — Discussion: 2022-01-22  GigaScience
FAST-SG: An alignment-free algorithm for hybrid assembly
Di Genova, A., Ruz, G. A., Sagot, M.-F., Maass, A.
10.1101/209122 — Posted: 2017-10-26 — Discussion: 2022-01-22  GigaScience
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience
Efficient and accurate detection of splice junctions from RNAseq with Portcullis
Mapleson, D., Venturini, L., Kaithakottil, G., Swarbreck, D.
10.1101/217620 — Posted: 2017-11-10 — Discussion: 2022-01-22  GigaScience
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Johnson, L. K., Alexander, H., Brown, C. T.
10.1101/323576 — Posted: 2018-05-17 — Discussion: 2022-01-22  GigaScience
AMBER: Assessment of Metagenome BinnERs
Meyer, F., Hofmann, P., Belmann, P., Garrido-Oter, R., Fritz, A., Sczyrba, A., McHardy, A. C.
10.1101/239582 — Posted: 2017-12-25 — Discussion: 2022-01-22  GigaScience
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Parekh, S., Ziegenhain, C., Vieth, B., Enard, W., Hellmann, I.
10.1101/153940 — Posted: 2017-06-22 — Discussion: 2022-01-22  GigaScience
Ximmer: A System for Improving Accuracy and Consistency of CNV Calling from Exome Data
Sadedin, S., Ellis, J., Masters, S., Oshlack, A.
10.1101/260927 — Posted: 2018-02-06 — Discussion: 2022-01-22  GigaScience
Error Correcting Optical Mapping Data
Mukherjee, K., Washimkar, D., Muggli, M. D., Salmela, L., Boucher, C.
10.1101/285692 — Posted: 2018-03-21 — Discussion: 2022-01-22  GigaScience
Monitoring changes in the Gene Ontology and their impact on genomic data analysis
Jacobson, M., Sedeno-Cortes, A. E., Pavlidis, P.
10.1101/320861 — Posted: 2018-05-13 — Discussion: 2022-01-22  GigaScience

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