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510 Reviews — All Partners — Bioinformatics

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Hot-starting software containers for bioinformatics analyses
Zhang, P., Hung, L.-H., Lloyd, W. J., Yeung, K. Y.
10.1101/204495 — Posted: 2017-10-17 — Discussion: 2022-01-22  GigaScience
Monitoring changes in the Gene Ontology and their impact on genomic data analysis
Jacobson, M., Sedeno-Cortes, A. E., Pavlidis, P.
10.1101/320861 — Posted: 2018-05-13 — Discussion: 2022-01-22  GigaScience
Leveraging multiple transcriptome assembly methods for improved gene structure annotation
Venturini, L., Caim, S., Kaithakottil, G., Mapleson, D. L., Swarbreck, D.
10.1101/216994 — Posted: 2017-11-09 — Discussion: 2022-01-22  GigaScience
Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning
Teng, H., Hall, M. B., Duarte, T., Cao, M. D., Coin, L.
10.1101/179531 — Posted: 2017-08-23 — Discussion: 2022-01-22  GigaScience
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Peters, K., Bradbury, J., Bergmann, S., Capuccini, M., Cascante, M., de Atauri, P., Ebbels, T., Foguet, C., Glen, R., Gonzalez-Beltran, A., Handakas, E., Hankemeier, T., Herman, S., Haug, K., Holub, P., Izzo, M., Jacob, D., Johnson, D., Jourdan, F., Kale, N., Karaman, I., Khalili, B., Emami Khoonsari, P., Kultima, K., Lampa, S., Larsson, A., Moreno, P., Neumann, S., Novella, J. A., O'Donovan, C., Pearce, J. T., Peluso, A., Pireddu, L., Piras, M. E., Reed, M. A., Rocca-Serra, P., Roger, P., Rosato, A., Rueedi, R., Ruttkies, C., Sadawi, N., Salek, R., Sansone, S.-A., Selivanov, V., Spjuth, O.
10.1101/409151 — Posted: 2018-09-06 — Discussion: 2022-01-22  GigaScience
Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Alakwaa, F., Huang, S., Garmire, L.
10.1101/283408 — Posted: 2018-03-16 — Discussion: 2022-01-22  GigaScience
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Leimeister, C.-A., Schellhorn, J., Schoebel, S., Gerth, M., Bleidorn, C., Morgenstern, B.
10.1101/306142 — Posted: 2018-04-23 — Discussion: 2022-01-22  GigaScience
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution
Xia, L. C., Ai, D., Lee, H., Andor, N., Li, C., Zhang, N. R., Ji, H. P.
10.1101/247536 — Posted: 2018-01-12 — Discussion: 2022-01-22  GigaScience
Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors
Lukes, T., Pospisil, J., Fliegel, K., Lasser, T., Hagen, G. M.
10.1101/246488 — Posted: 2018-01-11 — Discussion: 2022-01-21  GigaScience
Demographic Analysis of Mutations in Indian SARS-CoV-2 Isolates
Parekh, N., Agarwal, K.
10.1101/2021.09.22.461342 — Posted: 2021-09-23 — Discussion: 2022-01-14  PeerRef BioMed

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