bioRxiv/medRxiv TRiP Review Activity

478 Reviews — All Partners — Bioinformatics

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ISA API: An open platform for interoperable life science experimental metadata

Johnson, D., Cochrane, K., Davey, R. P., Etuk, A., Gonzalez-Beltran, A., Haug, K., Izzo, M., Larralde, M., Lawson, T. N., Minotto, A., Moreno, P., Nainala, V. C., O'Donovan, C., Pireddu, L., Roger, P., Shaw, F., Steinbeck, C., Weber, R. J., Sansone, S.-A., Rocca-Serra, P.

10.1101/2020.11.13.382119 — Posted: 2020-11-16 — Discussion: 2022-01-03 GigaScience

Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets

Apurva Narechania, Richard H Baker, Rob DeSalle, Barun Mathema, Barry Kreiswirth, Sergios-Orestis Kolokotronis, Paul J Planet

10.1101/045773 — Posted: 2016-03-25 — Discussion: 2022-01-03 GigaScience

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing

Minh Duc Cao, Devika Ganesamoorthy, Alysha Elliott, Huihui Zhang, Matthew Cooper, Lachlan Coin

10.1101/019356 — Posted: 2015-05-15 — Discussion: 2022-01-03 GigaScience

NCBI BLAST+ integrated into Galaxy

Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo

10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03 GigaScience

AGOUTI: improving genome assembly and annotation using transcriptome data

Simo V Zhang, Luting Zhuo, Matthew W Hahn

10.1101/033019 — Posted: 2015-11-26 — Discussion: 2022-01-03 GigaScience

Tools and techniques for computational reproducibility

Stephen R Piccolo, Michael B Frampton

10.1101/022707 — Posted: 2015-07-17 — Discussion: 2022-01-03 GigaScience

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

Lange, M., Alako, B., Cochrane, G., Ghaffar, M., Mascher, M., Habekost, P.-K., Hillebrand, U., Scholz, U., Zunder, F., Freitag, J., Scholz, A. H.

10.1101/2021.05.10.443393 — Posted: 2021-05-10 — Discussion: 2022-01-03 GigaScience

Long-read assemblies reveal structural diversity in genomes of organelles - an example with Acacia pycnantha

Syme, A. E., McLay, T. G. B., Udovicic, F., Cantrill, D. J., Murphy, D. J.

10.1101/2020.12.22.423164 — Posted: 2020-12-23 — Discussion: 2021-12-22 Gigabyte

Cell-to-cell and type-to-type heterogeneity of signaling networks: Insights from the crowd

Gabor, A., Tognetti, M., Driessen, A., Tanevski, J., Guo, B., Cao, W., Shen, H., Yu, T., Chung, V., Single Cell Signaling in Breast Cancer DREAM Consortium, , Bodenmiller, B., Saez-Rodriguez, J.

10.1101/2021.03.23.436603 — Posted: 2021-03-23 — Discussion: 2021-11-30 EMBO Press

DynaMorph: self-supervised learning of morphodynamic states of live cells

Wu, Z., Chhun, B. B., Popova, G., Guo, S.-M., Kim, C., Yeh, L.-H., Nowakowski, T. J., Zou, J., Mehta, S. B.

10.1101/2020.07.20.213074 — Posted: 2021-07-28 — Discussion: 2021-11-07 Review Commons