bioRxiv/medRxiv TRiP Review Activity

513 Reviews — All Partners — Bioinformatics

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YAMP: a framework enabling reproducibility in metagenomics research
Visconti, A., Martin, T. C., Falchi, M.
10.1101/223016 — Posted: 2017-11-21 — Discussion: 2022-01-22  GigaScience
Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors
Lukes, T., Pospisil, J., Fliegel, K., Lasser, T., Hagen, G. M.
10.1101/246488 — Posted: 2018-01-11 — Discussion: 2022-01-21  GigaScience
Demographic Analysis of Mutations in Indian SARS-CoV-2 Isolates
Parekh, N., Agarwal, K.
10.1101/2021.09.22.461342 — Posted: 2021-09-23 — Discussion: 2022-01-14  PeerRef BioMed
3D super-resolution imaging using a generalized and scalable progressive refinement method on sparse recovery (PRIS)
Yi, X., Piestun, R., Weiss, S.
10.1101/532143 — Posted: 2019-01-28 — Discussion: 2022-01-14  PeerRef BioMed
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle
De Anda, V., Zapata-Penasco, I., Poot Hernandez, A. C., Fruns, L. E., Contreras Moreira, B., Souza, V.
10.1101/191288 — Posted: 2017-09-20 — Discussion: 2022-01-13  GigaScience
iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks
Vaja Liluashvili, Selim Kalayci, Eugene Flouder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
10.1101/061374 — Posted: 2016-06-29 — Discussion: 2022-01-13  GigaScience
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
Luo, R., Schatz, M. C., Salzberg, S.
10.1101/111393 — Posted: 2017-02-24 — Discussion: 2022-01-13  GigaScience
VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.
Mills, R., Zhao, X., Weber, A. M.
10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13  GigaScience
Construction of the third generation Zea mays haplotype map
Robert Bukowski, Xiaosen Guo, Yanli Lu, Cheng Zou, Bing He, Zhengqin Rong, Bo Wang, Dawen Xu, Bicheng Yang, Chuanxiao Xie, Longjiang Fan, Shibin Gao, Xun Xu, Gengyun Zhang, Yingrui Li, Yinping Jiao, John Doebley, Jeffrey Ross-Ibarra, Vince Buffalo, Cinta M Romay, Edward S Buckler, Yunbi Xu, Jinsheng Lai, Doreen Ware, Qi Sun
10.1101/026963 — Posted: 2015-09-16 — Discussion: 2022-01-13  GigaScience
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
Michael P Pound, Alexandra J Burgess, Michael H Wilson, Jonathan A Atkinson, Marcus Griffiths, Aaron S Jackson, Adrian Bulat, Georgios Tzimiropoulos, Darren M Wells, Erik H Murchie, Tony P Pridmore, Andrew P French
10.1101/053033 — Posted: 2016-05-12 — Discussion: 2022-01-13  GigaScience

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