bioRxiv/medRxiv TRiP Review Activity

478 Reviews — All Partners — Bioinformatics

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Kronos: a workflow assembler for genome analytics and informatics
M Jafar Taghiyar, Jamie Rosner, Diljot Grewal, Bruno Grande, Radhouane Aniba, Jasleen Grewal, Paul C Boutros, Ryan D Morin, Ali Bashashati, Sohrab P Shah
10.1101/040352 — Posted: 2016-02-19 — Discussion: 2022-01-13  GigaScience
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle
De Anda, V., Zapata-Penasco, I., Poot Hernandez, A. C., Fruns, L. E., Contreras Moreira, B., Souza, V.
10.1101/191288 — Posted: 2017-09-20 — Discussion: 2022-01-13  GigaScience
iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks
Vaja Liluashvili, Selim Kalayci, Eugene Flouder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
10.1101/061374 — Posted: 2016-06-29 — Discussion: 2022-01-13  GigaScience
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model
Luo, R., Schatz, M. C., Salzberg, S.
10.1101/111393 — Posted: 2017-02-24 — Discussion: 2022-01-13  GigaScience
VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.
Mills, R., Zhao, X., Weber, A. M.
10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13  GigaScience
Construction of the third generation Zea mays haplotype map
Robert Bukowski, Xiaosen Guo, Yanli Lu, Cheng Zou, Bing He, Zhengqin Rong, Bo Wang, Dawen Xu, Bicheng Yang, Chuanxiao Xie, Longjiang Fan, Shibin Gao, Xun Xu, Gengyun Zhang, Yingrui Li, Yinping Jiao, John Doebley, Jeffrey Ross-Ibarra, Vince Buffalo, Cinta M Romay, Edward S Buckler, Yunbi Xu, Jinsheng Lai, Doreen Ware, Qi Sun
10.1101/026963 — Posted: 2015-09-16 — Discussion: 2022-01-13  GigaScience
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
Michael P Pound, Alexandra J Burgess, Michael H Wilson, Jonathan A Atkinson, Marcus Griffiths, Aaron S Jackson, Adrian Bulat, Georgios Tzimiropoulos, Darren M Wells, Erik H Murchie, Tony P Pridmore, Andrew P French
10.1101/053033 — Posted: 2016-05-12 — Discussion: 2022-01-13  GigaScience
NanoSim: nanopore sequence read simulator based on statistical characterization
Chen Yang, Justin Chu, René L Warren, Inanç Birol
10.1101/044545 — Posted: 2016-03-18 — Discussion: 2022-01-13  GigaScience
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury
10.1101/066613 — Posted: 2016-07-28 — Discussion: 2022-01-13  GigaScience
Open Natural Products Research: Curation and Dissemination of Biological Occurrences of Chemical Structures through Wikidata
Rutz, A., Sorokina, M., Galgonek, J., Mietchen, D., Willighagen, E., Graham, J. G., Stephan, R., Page, R., Vondrasek, J., Steinbeck, C., Pauli, G., Wolfender, J.-L., Bisson, J., Allard, P.-M.
10.1101/2021.02.28.433265 — Posted: 2021-03-01 — Discussion: 2022-01-04  eLife

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