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373 Reviews — GigaScience — All Subjects

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Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi
Baroncelli, R., Cobo-Diaz, J. F., Benocci, T., Peng, M., Battaglia, E., Haridas, S., Andreopoulos, W., LaButti, K., Pangilinan, J., Lipzen, A., Koriabine, M., Bauer, D., Le Floch, G., Makela, M. R., Drula, E., Henrissat, B., Grigoriev, I. V., Crouch, J. A., de Vries, R. P., Sukno, S. A., Thon, M. R.
10.1101/2022.09.22.508453 — Posted: 2022-09-22 — Discussion: 2024-07-01  GigaScience
Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
Streamlining remote nanopore data access with slow5curl
Wong, B., Ferguson, J. M., Gamaarachchi, H., Deveson, I. W.
10.1101/2023.11.28.569128 — Posted: 2023-11-30 — Discussion: 2024-05-13  GigaScience
On the variability of dynamic functional connectivity assessment methods
Torabi, M., Mitsis, G. D., Poline, J.-B.
10.1101/2023.07.13.548883 — Posted: 2023-07-15 — Discussion: 2024-05-13  GigaScience
SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome
Wang, X., Liu, Q., Li, A., Ruan, J.
10.1101/2020.05.25.115592 — Posted: 2020-05-28 — Discussion: 2024-05-13  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience
Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
Jeon, S., Choi, H., Jeon, Y., Choi, W.-H., Choi, H., An, K., Ryu, H., Bhak, J., Lee, H., Kwon, Y., Ha, S., Kim, Y. J., Blazyte, A., Kim, C., Kim, Y., Kang, Y., Woo, Y. J., Lee, C., Seo, J., Bolser, D., Biro, O., Shin, E.-S., Kim, B. C., Kim, S.-Y., Park, J.-H., Jeon, J., Jung, D., Lee, S., Bhak, J.
10.1101/2022.12.25.521908 — Posted: 2022-12-26 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms
Alcala, N., Voegele, C., Mangiante, L., Sexton-Oates, A., Clevers, H., Fernandez-Cuesta, L., Dayton, T. L., Foll, M.
10.1101/2023.08.31.555732 — Posted: 2023-09-03 — Discussion: 2024-04-08  GigaScience
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience

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