bioRxiv/medRxiv TRiP Review Activity

416 Reviews — GigaScience — All Subjects

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First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
Nasr, E., Henger, A., Gruning, B., Zierep, P., Batut, B.
10.1101/2024.06.26.600753 — Posted: 2024-06-30 — Discussion: 2025-09-30  GigaScience
A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes
Guo, Q., Pan, Y., Dai, W., Guo, F., Zeng, T., Chen, W., Mi, Y., Zhang, Y., Shi, S., Jiang, W., Cai, H., Wu, B., Zhou, Y., Wang, Y., Yang, C., Shi, X., Yan, X., Chen, J., Cai, C., Yang, J., Xu, X., Gu, Y., Dong, Y., Li, Q.
10.1101/2024.09.05.611321 — Posted: 2024-09-10 — Discussion: 2025-08-26  GigaScience
A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps
Patel, H. R., Alreja, K., Reis, A. M., Chang, J. K., Chew, Z. A., Jung, H., Hammond, J. M., Deveson, I. W., Ruiz-Herrera, A., Marin-Gual, L., Holleley, C. E., Zhang, X., Lister, N. C., Whiteley, S. L., Xiong, L., Dissanayake, D. S. B., Waters, P. D., Georges, A.
10.1101/2025.05.01.651798 — Posted: 2025-05-02 — Discussion: 2025-08-26  GigaScience
Telomere-to-telomere African wild rice (Oryza longistaminata) reference genome reveals segmental and structural variation
Guang, X., Yang, J., Zhang, S., Guo, F., Li, L., Lian, X., Zeng, T., Cai, C., Liu, F., Li, Z., Hu, Y., Fang, D., He, W., Sahu, S. K., Li, W., Lu, H., Li, Y., Liu, H., Xu, X., Guang, Y., Hu, F., Dong, Y., Wei, T.
10.1101/2024.09.05.611405 — Posted: 2024-09-07 — Discussion: 2025-08-26  GigaScience
Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
Aramburu, O., Pardo, B. G., Rodriguez-Villamayor, P., Blanco Hortas, A., Lamas, J., Dewari, P. S., Perojil, D., Boudinot, P., Macqueen, D. J., Bouza, C., Martinez, P.
10.1101/2024.02.15.580452 — Posted: 2024-02-15 — Discussion: 2025-08-04  GigaScience
SeuratExtend: Streamlining Single-Cell RNA-Seq Analysis Through an Integrated and Intuitive Framework
Hua, Y., Weng, L., Zhao, F., Rambow, F.
10.1101/2024.08.01.606144 — Posted: 2024-08-04 — Discussion: 2025-08-04  GigaScience
CellBinDB: A Large-Scale Multimodal Annotated Dataset for Cell Segmentation with Benchmarking of Universal Models
Shi, C., Fan, J., Deng, Z., Liu, H., Kang, Q., Li, Y., Guo, J., Wang, J., Gong, J., Liao, S., Chen, A., Zhang, Y., Li, M.
10.1101/2024.11.20.619750 — Posted: 2024-11-21 — Discussion: 2025-07-08  GigaScience
CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome
Barbosa, M. C., da Silva, J. F. M., Alves, L. C., Finn, R. D., Paschoal, A. R.
10.1101/2024.07.18.604052 — Posted: 2024-07-19 — Discussion: 2025-07-08  GigaScience
Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles
Yen, E. C., Gilbert, J. D., Balard, A., Taxonera, A., Fairweather, K., Ford, H. L., Thorburn, D.-M. J., Rossiter, S. J., Martin-Duran, J. M., Eizaguirre, C.
10.1101/2024.08.28.610089 — Posted: 2024-08-28 — Discussion: 2025-07-08  GigaScience

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