bioRxiv/medRxiv TRiP Review Activity

428 Reviews — GigaScience — All Subjects

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GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience
CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology
Xu, Q., Wu, L., Rebelo, M., Feng, S., Yu, X., Farheen, F., Kihara, D., Zhou, Z. H.
10.1101/2025.09.09.675185 — Posted: 2025-09-10 — Discussion: 2025-10-30  GigaScience
First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
Nasr, E., Henger, A., Gruning, B., Zierep, P., Batut, B.
10.1101/2024.06.26.600753 — Posted: 2024-06-30 — Discussion: 2025-09-30  GigaScience
Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography
Walle, M., Matheson, B. E., Boyd, S. K.
10.1101/2025.04.19.649449 — Posted: 2025-04-23 — Discussion: 2025-09-30  GigaScience
WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning
Nguyen, H.-H., Rudar, J., Lesperance, N., Vernygora, O., Taylor, G. W., Laing, C., Lapen, D., Leung, C. K., Lung, O.
10.1101/2025.02.25.639900 — Posted: 2025-02-28 — Discussion: 2025-09-30  GigaScience
Using synthetic RNA to benchmark poly(A) length inference from direct RNA sequencing.
Chang, J. J.-Y., Yang, X., Teng, H., Reames, B., Corbin, V., Coin, L. J. M.
10.1101/2024.10.25.620206 — Posted: 2024-10-25 — Discussion: 2025-09-30  GigaScience
The Open Pediatric Cancer Project
Geng, Z., Wafula, E., Corbett, R. J., Zhang, Y., Jin, R., Gaonkar, K. S., Shukla, S., Rathi, K. S., Hill, D., Lahiri, A., Miller, D. P., Sickler, A., Keith, K., Blackden, C., Chroni, A., Brown, M. A., Kraya, A. A., Koschmann, C. J., Aldape, K., Huang, X., Rood, B. R., Mason, J. L., Trooskin, G. R., Abdullaev, Z., Wang, P., Zhu, Y., Farrow, B. K., Farrel, A., Dybas, J. M., Zhong, C., Van Kuren, N., Zhang, B., Santi, M., Phul, S., Chinwalla, A. T., Resnick, A. C., Diskin, S. J., Tasian, S., Stefankiewicz, S., Maris, J. M., Ennis, B. M., Lueder, M. R., Naqvi, A. S., Coleman, N., Ma, W., Taylor, D
10.1101/2024.07.09.599086 — Posted: 2024-07-11 — Discussion: 2025-09-30  GigaScience
CNSistent integration and feature extraction from somatic copy number profiles
Streck, A., Schwarz, R. F.
10.1101/2024.12.23.630118 — Posted: 2024-12-23 — Discussion: 2025-09-30  GigaScience
SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues
Pechuan Jorge, X., Li, X., Risom, T., Zubkov, A., Tabatsky, E., Prilipko, A., Ye, X., Shi, Z., Nowicka, m., Peale, F., Hibar, D., Ziai, J., Jesudason, R., Orlova, D.
10.1101/2022.08.22.504841 — Posted: 2022-08-23 — Discussion: 2025-09-30  GigaScience

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