bioRxiv/medRxiv TRiP Review Activity

359 Reviews — GigaScience — All Subjects

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On the variability of dynamic functional connectivity assessment methods
Torabi, M., Mitsis, G. D., Poline, J.-B.
10.1101/2023.07.13.548883 — Posted: 2023-07-15 — Discussion: 2024-05-13  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms
Alcala, N., Voegele, C., Mangiante, L., Sexton-Oates, A., Clevers, H., Fernandez-Cuesta, L., Dayton, T. L., Foll, M.
10.1101/2023.08.31.555732 — Posted: 2023-09-03 — Discussion: 2024-04-08  GigaScience
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience
An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics
Zhang, C., Liu, L., Zhang, Y., Li, M., Fang, S., Kang, Q., Chen, A., Xu, X., Zhang, Y., Li, Y.
10.1101/2023.08.08.552402 — Posted: 2023-08-12 — Discussion: 2024-02-21  GigaScience
Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.
10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22  GigaScience

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