bioRxiv/medRxiv TRiP Review Activity

132 Reviews — eLife — Bioinformatics

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Macroscopic Analyses of RNA-Seq Data to Reveal Chromatin Modifications in Aging and Disease
Mahajan, A., Ratti, F., Wang, B., El-Samad, H., Kaufman, J. H., Gopalakrishnan, V.
10.1101/2025.05.14.654062 — Posted: 2025-05-18 — Discussion: 2025-09-23  eLife
Restoring data balance via generative models of T-cell receptors for antigen-binding prediction
Loffredo, E., Pastore, M., Cocco, S., Monasson, R.
10.1101/2024.07.10.602897 — Posted: 2024-07-15 — Discussion: 2025-09-15  eLife
Identification of type 2 diabetes- and obesity-associated human β-cells using deep transfer learning
Roy, G., Syed, R., Lazaro, O., Robertson, S., McCabe, S. D., Rodriguez, D., Mawla, A. M., Johnson, T. S., Kalwat, M. A.
10.1101/2024.01.18.576260 — Posted: 2024-01-23 — Discussion: 2025-09-02  eLife
The Lipocone Superfamily: A Unifying Theme In Metabolism Of Lipids, Peptidoglycan And Exopolysaccharides, Inter-Organismal Conflicts And Immunity
Burroughs, A. M., Nicastro, G. G., Aravind, L.
10.1101/2025.01.14.632903 — Posted: 2025-01-19 — Discussion: 2025-07-18  eLife
Real-time transcriptomic profiling in distinct experimental conditions
Butto, T., Pastore, S., Mueller, M., Iyer, K. V., Muendnich, S., Wierczeiko, A., Friedland, K., Helm, M., Winz, M.-L., Gerber, S.
10.1101/2024.03.26.586831 — Posted: 2024-03-29 — Discussion: 2025-07-14  eLife
Pan-tissue Transcriptome Analysis Reveals Sex-dimorphic Human Aging
Wang, S., Dong, D., Li, X., Wang, Z.
10.1101/2023.05.26.542373 — Posted: 2023-05-26 — Discussion: 2025-07-09  eLife
The impact of ambient contamination on demultiplexing methods for single-nucleus multiome experiments
Li, T., Alvarez, M., Liu, C., Abuhanna, K., Sun, Y., Ernst, J., Plath, K., Balliu, B., Luo, C., Zaitlen, N.
10.1101/2025.02.06.636969 — Posted: 2025-02-08 — Discussion: 2025-07-08  eLife
Predicting the effect of CRISPR-Cas9-based epigenome editing
Batra, S. S., Cabrera, A., Spence, J. P., Hilton, I., Song, Y. S.
10.1101/2023.10.03.560674 — Posted: 2023-10-03 — Discussion: 2025-05-23  eLife
Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells
Dehghannasiri, R., Henderson, G., Bierman, R., Chaung, K., Baharav, T. Z., Wang, P. L., Salzman, J.
10.1101/2022.12.06.519414 — Posted: 2022-12-07 — Discussion: 2025-05-22  eLife
Pathway activation model for personalized prediction of drug synergy
Trac, Q. T., Huang, Y., Erkers, T., Östling, P., Bohlin, A., Osterroos, A., Vesterlund, M., Jafari, R., Siavelis, I., Backvall, H., Kiviluoto, S., Orre, L., Rantalainen, M., Lehtiö, J., Lehmann, S., Kallioniemi, O., Pawitan, Y., Vu, T. N.
10.1101/2024.06.05.597583 — Posted: 2024-06-08 — Discussion: 2025-05-20  eLife

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