bioRxiv/medRxiv TRiP Review Activity

128 Reviews — eLife — Bioinformatics

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Real-time transcriptomic profiling in distinct experimental conditions
Butto, T., Pastore, S., Mueller, M., Iyer, K. V., Muendnich, S., Wierczeiko, A., Friedland, K., Helm, M., Winz, M.-L., Gerber, S.
10.1101/2024.03.26.586831 — Posted: 2024-03-29 — Discussion: 2025-07-14  eLife
Pan-tissue Transcriptome Analysis Reveals Sex-dimorphic Human Aging
Wang, S., Dong, D., Li, X., Wang, Z.
10.1101/2023.05.26.542373 — Posted: 2023-05-26 — Discussion: 2025-07-09  eLife
The impact of ambient contamination on demultiplexing methods for single-nucleus multiome experiments
Li, T., Alvarez, M., Liu, C., Abuhanna, K., Sun, Y., Ernst, J., Plath, K., Balliu, B., Luo, C., Zaitlen, N.
10.1101/2025.02.06.636969 — Posted: 2025-02-08 — Discussion: 2025-07-08  eLife
Predicting the effect of CRISPR-Cas9-based epigenome editing
Batra, S. S., Cabrera, A., Spence, J. P., Hilton, I., Song, Y. S.
10.1101/2023.10.03.560674 — Posted: 2023-10-03 — Discussion: 2025-05-23  eLife
Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells
Dehghannasiri, R., Henderson, G., Bierman, R., Chaung, K., Baharav, T. Z., Wang, P. L., Salzman, J.
10.1101/2022.12.06.519414 — Posted: 2022-12-07 — Discussion: 2025-05-22  eLife
Pathway activation model for personalized prediction of drug synergy
Trac, Q. T., Huang, Y., Erkers, T., Östling, P., Bohlin, A., Osterroos, A., Vesterlund, M., Jafari, R., Siavelis, I., Backvall, H., Kiviluoto, S., Orre, L., Rantalainen, M., Lehtiö, J., Lehmann, S., Kallioniemi, O., Pawitan, Y., Vu, T. N.
10.1101/2024.06.05.597583 — Posted: 2024-06-08 — Discussion: 2025-05-20  eLife
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Osorio, D., Tekpli, X., Kristensen, V. N., Kuijjer, M. L.
10.1101/2022.03.31.486602 — Posted: 2022-04-01 — Discussion: 2025-05-09  eLife
AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface
Zhou, Y., Liu, W., Huang, Z., Gou, Y., Liu, S., Jiang, L., Yang, Y., Huang, J.
10.1101/2024.11.12.623267 — Posted: 2024-11-17 — Discussion: 2025-05-09  eLife
Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings
Deserno, M., Bozek, K.
10.1101/2025.02.14.638285 — Posted: 2025-02-19 — Discussion: 2025-04-24  eLife
Latent representation of single-cell transcriptomes enables algebraic operations on cellular phenotypes
Sengupta, D., Nelson, C. C., Bhattacharya, N., Rockstroh, A., Roquilly, A., Hollier, B., Ahuja, G., Kumar, H., Poschmann, J., Lehman, M., Thomas, S. K., Deshpande, S. S., Chawla, S., Solomon, P., Fourgeux, C.
10.1101/2022.12.28.522060 — Posted: 2022-12-30 — Discussion: 2025-04-17  eLife

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