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122 Reviews — eLife — Bioinformatics

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Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings
Deserno, M., Bozek, K.
10.1101/2025.02.14.638285 — Posted: 2025-02-19 — Discussion: 2025-04-24  eLife
Latent representation of single-cell transcriptomes enables algebraic operations on cellular phenotypes
Sengupta, D., Nelson, C. C., Bhattacharya, N., Rockstroh, A., Roquilly, A., Hollier, B., Ahuja, G., Kumar, H., Poschmann, J., Lehman, M., Thomas, S. K., Deshpande, S. S., Chawla, S., Solomon, P., Fourgeux, C.
10.1101/2022.12.28.522060 — Posted: 2022-12-30 — Discussion: 2025-04-17  eLife
Decoding Liver Cancer Prognosis: From Multi-omics Subtypes, Prognostic Models to Single Cell Validation
Wang, Y., Wu, Y., Zhang, H., Zhou, X., Song, A., Qiu, H., Yuan, X., Xiong, H., Zou, Y.
10.1101/2024.11.04.610003 — Posted: 2024-11-06 — Discussion: 2025-04-15  eLife
Hidden GPCR structural transitions addressed by multiple walker supervised molecular dynamics (mwSuMD)
Deganutti, G., Pipito, L., Rujan, R. M., Weizmann, T., Griffin, P., Ciancetta, A., Moro, S., Reynolds, C. A.
10.1101/2022.10.26.513870 — Posted: 2022-10-27 — Discussion: 2025-04-10  eLife
Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
Uematsu, M., Baskin, J. M.
10.1101/2023.04.12.536413 — Posted: 2023-04-13 — Discussion: 2025-04-04  eLife
Generative modeling for RNA splicing predictions and design
Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P., Gardner, J. R., Barash, Y.
10.1101/2025.01.20.633986 — Posted: 2025-01-24 — Discussion: 2025-03-19  eLife
Celldetective: an AI-enhanced image analysis toolfor unraveling dynamic cell interactions
Torro, R., Diaz Bello, B., El Arawi, D., Ammer, L., Chames, P., Sengupta, K., Limozin, L.
10.1101/2024.03.15.585250 — Posted: 2024-03-17 — Discussion: 2025-03-11  eLife
Raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A., Cheng, L.
10.1101/2024.01.11.575207 — Posted: 2024-01-11 — Discussion: 2025-03-06  eLife
Exploring the repository of de novo designed bifunctional antimicrobial peptides through deep learning
Dong, R., Liu, R., Liu, Z., Liu, Y., Zhao, G., Li, H., Hou, S., Ma, X., Kang, H., Liu, J., Guo, F., Zhao, P., Wang, J., Wang, C., Wu, X., Ye, S., Zhu, C.
10.1101/2024.02.23.581845 — Posted: 2025-01-08 — Discussion: 2025-03-03  eLife
Testing nonparametrically for dependence between nonstationary time series with very few replicates
Yuan, A. E., Shou, W.
10.1101/2023.03.13.531689 — Posted: 2023-03-14 — Discussion: 2025-02-24  eLife

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