bioRxiv/medRxiv TRiP Review Activity

510 Reviews — All Partners — Bioinformatics

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Tourmaline: a workflow for rapid and reproducible amplicon sequence analysis using QIIME 2 and Snakemake
Thompson, L. R., Anderson, S. R., Den Uyl, P. A., Patin, N. V., Sanderson, G., Goodwin, K. D.
10.1101/2021.09.15.460495 — Posted: 2021-09-17 — Discussion: 2022-09-05  GigaScience
Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis
Imoto, Y., Nakamura, T., Escolar, E. G., Yoshiwaki, M., Kojima, Y., Yabuta, Y., Katou, Y., Yamamoto, T., Hiraoka, Y., Saitou, M.
10.1101/2022.05.02.490246 — Posted: 2022-05-02 — Discussion: 2022-08-19  EMBO Press
Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade and the role of insertions and extensions in diversification
Burnim, A. A., Spence, M. A., Xu, D., Jackson, C., Ando, N.
10.1101/2022.04.23.489257 — Posted: 2022-04-23 — Discussion: 2022-08-11  eLife
Standardized genome-wide function prediction enables comparative functional genomics in plants: a new application area for Gene Ontologies
Fattel, L., Psaroudakis, D., Yanarella, C., Chiteri, K., Dostalik, H. A., Joshi, P., Starr, D. C., Vu, H., Wimalanathan, K., Lawrence-Dill, C. J.
10.1101/2021.04.25.441366 — Posted: 2021-04-28 — Discussion: 2022-08-09  GigaScience
Improving the annotation of the Heterorhabditis bacteriophora genome
McLean, F., Berger, D., Laetsch, D., Schwartz, H., Blaxter, M.
10.1101/225904 — Posted: 2017-11-30 — Discussion: 2022-08-09  GigaScience
Evaluation of in silico predictors on short nucleotide variants in HBA1, HBA2 and HBB associated with haemoglobinopathies
Tamana, S., Xenophontos, M., Minaidou, A., Stephanou, C., Harteveld, C. L., Bento, C., Traeger-Synodinos, J., Fylaktou, I., Yasin, N. M., Hamid, F. S. A., Esa, E., Halim-Fikri, H., Zilfalil, B. A., Kakouri, A. C., ClinGen Hemoglobinopathy VCEP, , Kleanthous, M., Kountouris, P.
10.1101/2022.04.07.484934 — Posted: 2022-04-09 — Discussion: 2022-08-02  eLife
CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
Orjuela, J., Comte, A., Ravel, S., Charriat, F., Vi, T., Sabot, F., Cunnac, S.
10.1101/2021.07.19.452922 — Posted: 2021-07-20 — Discussion: 2022-07-22  Peer Community In
Comprehensive machine-learning survival framework develop a consensus model in large scale multi-center cohorts for pancreatic cancer
Wang, L., Liu, Z., Liang, R., Wang, W., Zhu, R., Li, J., Xing, Z., Weng, S., Han, X., Sun, Y.-l.
10.1101/2022.05.15.492020 — Posted: 2022-05-16 — Discussion: 2022-07-18  eLife
Nomograms of Human Hippocampal Volume Shifted by Polygenic Scores
Janahi, M., Aksman, L. M., Schott, J., Altmann, A.
10.1101/2022.02.17.480931 — Posted: 2022-02-19 — Discussion: 2022-06-30  eLife
A practical tool for Maximal Information Coefficient analysis
Albanese, D., Riccadonna, S., Donati, C., Franceschi, P.
10.1101/215855 — Posted: 2017-11-07 — Discussion: 2022-06-23  GigaScience

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