bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid
Tamayo, B., Kercher, K., Vosburg, C., Massimino, C., Jernigan, M. R., Hasan, D. L., Harper, D., Mathew, A., Adkins, S., Shippy, T., Hosmani, P. S., Flores-Gonzalez, M., Panitz, N., Mueller, L. A., Hunter, W. B., Brown, S. J., Delia, T., Saha, S.
10.1101/2021.10.11.463922 — Posted: 2021-10-12 — Discussion: 2022-02-20  Gigabyte
Benchmarking supervised signature-scoring methods for single-cell RNA sequencing data in cancer
Zheng, S., Nighat, N., Ye, Z., Chen, Y., Wang, X.
10.1101/2021.06.29.450404 — Posted: 2021-07-01 — Discussion: 2022-02-18  eLife
Rapid, Reference-Free Human Genotype Imputation with Denoising Autoencoders
Dias, R., Evans, D., Chen, S.-F., Chen, K.-Y., Chan, L., Torkamani, A.
10.1101/2021.12.01.470739 — Posted: 2021-12-02 — Discussion: 2022-02-16  eLife
Genetic, metabolic, and molecular insights into the diverse outcomes of diet-induced obesity in mice
Bachmann, A. M., Morel, J.-D. H., El Alam, G., Rodriguez-Lopez, S., de lima, T. I., Goeminne, L. J. E., Benegiamo, G., Bou Sleiman, M. S., Auwerx, J.
10.1101/2021.09.02.458729 — Posted: 2021-09-05 — Discussion: 2022-02-13  eLife
Discovering fragment length signatures of circulating tumor DNA using Non-negative Matrix Factorization
Renaud, G., Noergaard, M., Lindberg, J., Groenberg, H., De Laere, B., Jensen, J. B., Borre, M., Andersen, C. L., Soerensen, K. D., Maretty, L., Besenbacher, S.
10.1101/2021.06.09.447533 — Posted: 2021-06-10 — Discussion: 2022-02-11  eLife
CAMITAX: Taxon labels for microbial genomes
Bremges, A., Fritz, A., McHardy, A. C.
10.1101/532473 — Posted: 2019-01-29 — Discussion: 2022-02-10  GigaScience
Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri
Grace, R., Massimino, C., Shippy, T., Tank, W., Hosmani, P. S., Flores-Gonzalez, M., Mueller, L. A., Hunter, W. B., Benoit, J. B., Brown, S. J., Delia, T., Saha, S.
10.1101/2021.10.18.464890 — Posted: 2021-10-19 — Discussion: 2022-02-10  Gigabyte
FASTQuick: Rapid and comprehensive quality assessment of raw sequence reads
Zhang, F., Kang, H. M.
10.1101/2020.06.10.143768 — Posted: 2020-06-11 — Discussion: 2022-02-06  GigaScience
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.
10.1101/596817 — Posted: 2019-04-03 — Discussion: 2022-02-06  GigaScience
Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Wu, S., Fang, Z., Tan, J., Li, M., Wang, C., Guo, Q., Xu, C., Jiang, X., Zhu, H.
10.1101/2020.12.25.424404 — Posted: 2020-12-26 — Discussion: 2022-02-06  GigaScience

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