bioRxiv/medRxiv TRiP Review Activity

132 Reviews — eLife — Bioinformatics

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The structural context of mutations in proteins predicts their effect on antibiotic resistance
Green, A. G., Tasmin, M., Vargas, R., Farhat, M. R.
10.1101/2025.09.23.676583 — Posted: 2025-09-25 — Discussion: 2025-12-12  eLife
TSvelo: Comprehensive RNA velocity inference by jointly modeling Transcription and Splicing
Li, J., Wang, Z., Shen, H.-B., Yuan, Y.
10.1101/2024.12.24.630058 — Posted: 2024-12-24 — Discussion: 2025-11-24  eLife
Identification and classification of ion-channels across the tree of life: Insights into understudied CALHM channels
Taujale, R., Park, S. J., Gravel, N., Soleymani, S., Carter, R., Boyd, K., Keuning, S., Ruan, Z., Lü, W., Kannan, N.
10.1101/2025.02.10.637530 — Posted: 2025-02-18 — Discussion: 2025-11-17  eLife
Raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A., Cheng, L.
10.1101/2024.01.11.575207 — Posted: 2024-01-11 — Discussion: 2025-11-07  eLife
MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets
Gallean, B., Laurent, T., Biasuz, K., Clement, A., Faraj, N., Lemaire, P., Faure, E.
10.1101/2025.02.21.639560 — Posted: 2025-03-01 — Discussion: 2025-11-04  eLife
Artificial Intelligence uncovers Evolutionarily Conserved Intracellular Allosteric Modulators of GPCR-Gα interface.
Mohanty, S. K., Mittal, A., Gaur, A., Solanki, S., Kumar, S., Duari, S., Arora, S., Gautam, V., Dixit, N. K., Ghosh, T. S., Sengupta, D., Gupta, S. K., Murugan, N. A., Ahuja, G.
10.1101/2023.02.14.528587 — Posted: 2023-02-15 — Discussion: 2025-10-29  eLife
Subtle methodological variations substantially impact correlation test results in ecological time series
Cannistra, C., Hoang, L., Yuan, A. E., Shou, W.
10.1101/2024.10.11.617506 — Posted: 2024-10-15 — Discussion: 2025-10-21  eLife
Decoding molecular mechanisms for loss of function variants in the human proteome
Cagiada, M., Jonsson, N., Lindorff-Larsen, K.
10.1101/2024.05.21.595203 — Posted: 2024-05-22 — Discussion: 2025-10-20  eLife
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
Martin, N. X., Olsen, P., Quon, J., Campos, J., Valera Cuevas, N. J., Nagra, J., VanNess, M., Maltzer, Z., Gelfand, E., Oyama, A., Gary, A., Wang, Y., Alaya, A., Ruiz, A., Reynoldson, C., Bielstein, C., Pom, C. A., Huang, C., Slaughterback, C., Liang, E., Alexander, J., Ariza, J., Malone, J., Melchor, J., Colbert, K., Brouner, K., Shulga, L., Reding, M., Latimer, P., Sanchez, R., Barta, S., Egdorf, T., Madigan, Z., Pagan, C., Close, J., Long, B., Kunst, M., Lein, E., Zeng, H., McMillen, D. A., Waters, J.
10.1101/2024.12.04.626766 — Posted: 2024-12-07 — Discussion: 2025-10-09  eLife
Product-stabilized filamentation by human glutamine synthetase allosterically tunes metabolic activity
Greene, E., Muniz, R., Yamamura, H., Hoff, S. E., Bajaj, P., Lee, D. J., Thompson, E. M., Arada, A., Lee, G. M., Bonomi, M., Kollman, J. M., Fraser, J. S.
10.1101/2025.07.04.663231 — Posted: 2025-07-06 — Discussion: 2025-09-24  eLife

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