bioRxiv/medRxiv TRiP Review Activity

507 Reviews — All Partners — Bioinformatics

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CausalCell: applying causal discovery to single-cell analyses
Wen, Y., Huang, J., Zhang, H., Guo, S., Elyahu, Y., Monsonego, A., Ding, Y., ZHU, H.
10.1101/2022.08.19.504494 — Posted: 2022-08-19 — Discussion: 2022-12-13  eLife
Identify non-mutational p53 loss of function in human cancers
Li, Q., Zhang, Y., Zhang, Z., Oberg, A., Kozono, D., Lu, H., Sarkaria, J. N., Ma, L., Wang, L.
10.1101/2022.07.28.501874 — Posted: 2022-07-31 — Discussion: 2022-12-04  eLife
Longitudinal fundus imaging and its genome-wide association analysis provide evidence for a human retinal aging clock
Ahadi, S., Wilson, K. A., Babenko, B., McLean, C. Y., Bryant, D., Pritchard, O., Carrera, E. M., Lamy, R., Stewart, J. M., Varadarajan, A., Berndl, M., Kapahi, P., Bashir, A.
10.1101/2022.07.25.501485 — Posted: 2022-07-27 — Discussion: 2022-12-02  eLife
Generative power of a protein language model trained on multiple sequence alignments
Sgarbossa, D., Lupo, U., Bitbol, A.-F.
10.1101/2022.04.14.488405 — Posted: 2022-04-15 — Discussion: 2022-11-22  eLife
CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
Cuomo, A. S., Heinen, T., Vagiaki, D., Horta, D., Marioni, J., Stegle, O.
10.1101/2021.09.01.458524 — Posted: 2021-09-02 — Discussion: 2022-11-21  EMBO Press
Changes in chromatin accessibility are not concordant with transcriptional changes for single-factor perturbations
Kiani, K., Sanford, E. M., Goyal, Y., Raj, A.
10.1101/2022.02.03.478981 — Posted: 2022-02-03 — Discussion: 2022-11-21  EMBO Press
Transposable elements as sensors of SARS-CoV-2 infection
Sorek, M., Meshorer, E., Schlesinger, S.
10.1101/2021.02.25.432821 — Posted: 2021-02-25 — Discussion: 2022-11-21  EMBO Press
scatterHatch: an R/Bioconductor package for colorblind accessible visualization of single-cell data
Guha, T., Fertig, E., Deshpande, A.
10.1101/2021.10.07.463279 — Posted: 2021-10-07 — Discussion: 2022-11-09  eLife
Lack of evidence for increased transcriptional noise in aged tissues
Ibanez-Sole, O., Ascension, A. M., Arauzo-Bravo, M. J., Izeta, A.
10.1101/2022.05.18.492432 — Posted: 2022-05-19 — Discussion: 2022-11-08  eLife
Neuroendocrinology of the lung revealed by single cell RNA sequencing
Kuo, C. S., Darmanis, S., Diaz de Arce, A., Liu, Y., Almanzar, N., Wu, T. T. H., Quake, S. R., Krasnow, M. A.
10.1101/2022.03.08.483399 — Posted: 2022-03-10 — Discussion: 2022-10-31  eLife

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