bioRxiv/medRxiv TRiP Review Activity

509 Reviews — All Partners — Bioinformatics

Most recent first Previous |  Page 27: Articles 261-270  | Next

BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
Loop detection using Hi-C data with HiCExplorer
Wolff, J., Backofen, R., Gruening, B.
10.1101/2020.03.05.979096 — Posted: 2020-03-06 — Discussion: 2023-02-15  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
Kanduri, C., Pavlovic, M., Scheffer, L., Motwani, K., Chernigovskaya, M., Greiff, V., Sandve, G. K.
10.1101/2021.05.23.445346 — Posted: 2021-05-23 — Discussion: 2023-02-15  GigaScience
ProteInfer: deep networks for protein functional inference
Sanderson, T., Bileschi, M. L., Belanger, D., Colwell, L.
10.1101/2021.09.20.461077 — Posted: 2021-09-23 — Discussion: 2023-02-08  eLife
RAREFAN: a webservice to identify REPINs and RAYTs in bacterial genomes
Fortmann-Grote, C., Balk, J., Bertels, F.
10.1101/2022.05.22.493013 — Posted: 2022-05-24 — Discussion: 2023-02-08  Peer Community In
CriSNPr: a single interface for the curated and de-novo design of gRNAs for CRISPR diagnostics using diverse Cas systems
Chakraborty, D., Ansari, A. H., Kumar, M., Sarkar, S., Maiti, S.
10.1101/2022.02.17.479653 — Posted: 2022-02-17 — Discussion: 2023-01-25  eLife
Comparative analysis of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing
Liu, J., Tran, V., Vemuri, V. N. P., Byrne, A., Borja, M., Agarwal, S., Wang, R., Awayan, K., Murti, A., Taychameekiatchai, A., Wang, B., Emanuel, G., He, J., Haliburton, J., Pisco, A. O., Neff, N.
10.1101/2022.03.04.483068 — Posted: 2022-03-07 — Discussion: 2023-01-19  EMBO Press
CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing
Sanvicente, M., Garcia-Valiente, A., Jouide, S., Jaraba-Wallace, J., Bautista, E., Escobosa, M., Sanchez-Mejias, A., Güell, M.
10.1101/2022.09.02.506351 — Posted: 2022-09-03 — Discussion: 2023-01-12  Review Commons
Network-based multi-omics integration reveals metabolic risk profile within treated HIV-infection
Mikaeloff, F., Gelpi, M., Benfeitas, R., Knudsen, A. D., Vestad, B., Hogh, J., Hov, J., Benfield, T., Murray, D., Giske, C. G., Mardinoglu, A., Troseid, M., Poulsen, S. D., Neogi, U.
10.1101/2022.06.08.495246 — Posted: 2022-06-13 — Discussion: 2023-01-04  eLife

Evaluation Sources