bioRxiv/medRxiv TRiP Review Activity

506 Reviews — All Partners — Bioinformatics

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Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples
Kang, K., Chong, H., Ning, K.
10.1101/2020.11.17.387811 — Posted: 2020-11-20 — Discussion: 2023-03-01  GigaScience
DeePVP: Identification and classification of phage virion protein using deep learning
Fang, Z., Feng, T., Zhou, H.
10.1101/2021.10.23.465539 — Posted: 2021-10-24 — Discussion: 2023-03-01  GigaScience
SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data
Zhang, Y., Wong, G., Mann, G., Muller, S., Yang, J. Y. H.
10.1101/2021.07.11.451967 — Posted: 2021-07-12 — Discussion: 2023-03-01  GigaScience
Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering.
Avesani, S., Viesi, E., Alessandrì, L., Motterle, G., Bonnici, V., Beccuti, M., Calogero, R., Giugno, R.
10.1101/2022.04.27.489655 — Posted: 2022-04-28 — Discussion: 2023-03-01  GigaScience
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Neron, B., Denise, R., Coluzzi, C., Touchon, M., Rocha, E. P. C., Abby, S. S.
10.1101/2022.09.02.506364 — Posted: 2022-09-04 — Discussion: 2023-02-24  Peer Community In
Learning the differences: a transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity
Bravi, B., Di Gioacchino, A., Fernandez-de-Cossio-Diaz, J., Walczak, A. M., Mora, T., Cocco, S., Monasson, R.
10.1101/2022.12.06.519259 — Posted: 2022-12-09 — Discussion: 2023-02-19  eLife
Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI
Kalyakulina, A., Yusipov, I., Bacalini, M. G., Franceschi, C., Vedunova, M., Ivanchenko, M.
10.1101/2022.05.10.491404 — Posted: 2022-05-11 — Discussion: 2023-02-17  GigaScience
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
Kanduri, C., Pavlovic, M., Scheffer, L., Motwani, K., Chernigovskaya, M., Greiff, V., Sandve, G. K.
10.1101/2021.05.23.445346 — Posted: 2021-05-23 — Discussion: 2023-02-15  GigaScience

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