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442 Reviews — GigaScience — All Subjects

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BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience
Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy
Murat, K., Gruning, B., Poterlowicz, P. W., Westgate, G., Tobin, D. J., Poterlowicz, K.
10.1101/553784 — Posted: 2019-02-19 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Pacific oyster (Crassostrea gigas)
Penaloza, C., Gutierrez, A. P., Eory, L., Wang, S., Guo, X., Archibald, A. L., Bean, T. P., Houston, R. D.
10.1101/2020.09.25.313494 — Posted: 2020-09-25 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors
Wang, W., Wang, Z., Li, X., Ni, Z., Hu, Z., Xin, M., Peng, H., Yao, Y., Sun, Q., Guo, W.
10.1101/626705 — Posted: 2019-05-16 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience
Long-reads assembly of the Brassica napus reference genome, Darmor-bzh
Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.
10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24  GigaScience
Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience

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