bioRxiv/medRxiv TRiP Review Activity

375 Reviews — GigaScience — All Subjects

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Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools

Cuadrat, R. R. d. C., Sorokina, M., Andrade, B. G., Davila, A. M. R.

10.1101/765446 — Posted: 2019-09-19 — Discussion: 2022-01-24 GigaScience

High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome

Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.

10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24 GigaScience

CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing

Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.

10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24 GigaScience

Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.

Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.

10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24 GigaScience

Genome Diversity in Ukraine

Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.

10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24 GigaScience

Discovering Data Access and Use Requirements Using the Data Tags Suite (DATS) Model

Alter, G., Gonzalez-Beltran, A., Ohno-Machado, L., Rocca-Serra, P.

10.1101/518571 — Posted: 2019-01-11 — Discussion: 2022-01-23 GigaScience

Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction

Johnson, K., Hagen, G. M.

10.1101/765396 — Posted: 2019-09-11 — Discussion: 2022-01-23 GigaScience

RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements

Osipova, E., Hecker, N., Hiller, M.

10.1101/696922 — Posted: 2019-07-09 — Discussion: 2022-01-23 GigaScience

GenPipes: an open-source framework for distributed and scalable genomic analyses

Bourgey, M., Dali, R., Eveleigh, R., Chen, K. C., Letourneau, L., Fillon, J., Michaud, M., Caron, M., Sandoval, J., Lefebvre, F., Leveque, G., Mercier, E., Bujold, D., Marquis, P., Tran Van, P., Morais, D., Tremblay, J., Shao, X., Henrion, E., Gonzalez, E., Quirion, P.-O., Caron, B., Bourque, G.

10.1101/459552 — Posted: 2018-11-01 — Discussion: 2022-01-23 GigaScience

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

Conte, M. A., Joshi, R., Moore, E. C., Nandamuri, S. P., Gammerdinger, W. J., Roberts, R. B., Carleton, K. L., Lien, S., Kocher, T. D.

10.1101/383992 — Posted: 2018-08-03 — Discussion: 2022-01-23 GigaScience