bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

Most recent first Previous | Page 24: Articles 231-240 | Next

An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Giron, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S., Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P., Archibald, A. L.

10.1101/668921 — Posted: 2019-06-13 — Discussion: 2022-01-24 GigaScience

Correcting for experiment-specific variability in expression compendia can remove underlying signals

Lee, A. J., Park, Y., Doing, G., Hogan, D. A., Greene, C. S.

10.1101/2020.05.03.066597 — Posted: 2020-05-03 — Discussion: 2022-01-24 GigaScience

CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing

Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.

10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24 GigaScience

A catalog of microbial genes from the bovine rumen reveals the determinants of herbivory

Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estelle-Fabrellas, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X., Yang, H., Wang, J., Madsen, L., Kristiansen, K., Henrissat, B., Ehrlich, S. D., Morgavi, D. P.

10.1101/272690 — Posted: 2018-02-27 — Discussion: 2022-01-24 GigaScience

Community Standards for Open Cell Migration Data

Gonzalez-Beltran, A. N., Masuzzo, P., Ampe, C., Bakker, G.-J., Besson, S., Eibl, R. H., Friedl, P., Gunzer, M., Kittisopikul, M., Le Devedec, S. E., Leo, S., Moore, J., Paran, Y., Prilusky, J., Rocca-Serra, P., Roudot, P., Schuster, M., Sergeant, G., Stromblad, S., Swedlow, J. R., van Erp, M., Van Troys, M., Zaritsky, A., Sansone, S.-A., Martens, L.

10.1101/803064 — Posted: 2019-10-14 — Discussion: 2022-01-24 GigaScience

Genome Diversity in Ukraine

Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.

10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24 GigaScience

Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus

Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.

10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24 GigaScience

Tool recommender system in Galaxy using deep learning

Kumar, A., Gruening, B., Backofen, R.

10.1101/838599 — Posted: 2019-11-12 — Discussion: 2022-01-24 GigaScience

Global Analysis of Human mRNA Folding Disruptions in Synonymous Variants Demonstrates Significant Population Constraint

Gaither, J. B. S., Lammi, G. E., Li, J. L., Gordon, D. M., Kuck, H. C., Kelly, B. J., Fitch, J. R., White, P.

10.1101/712679 — Posted: 2019-07-24 — Discussion: 2022-01-24 GigaScience

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

Tekman, M., Batut, B., Ostrovsky, A., Antoniewski, C., Clements, D., Ramirez, F., Etherington, G. J., Hotz, H.-R., Scholtalbers, J., Manning, J. R., Bellenger, L., Doyle, M. A., Heydarian, M., Huang, N., Soranzo, N., Moreno, P., Papatheodorou, I., Nekrutenko, A., Taylor, J., Blankenberg, D., Backofen, R., Grüning, B.

10.1101/2020.06.06.137570 — Posted: 2020-06-08 — Discussion: 2022-01-24 GigaScience