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456 Reviews — GigaScience — All Subjects

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4D Single-Cell Spatial Transcriptomics Reveals Dynamic Morphogenetic Gradients and Regenerative Domains in Planarians
Han, K., Chen, Y., Li, Y., Guo, L., Wang, Y., Liu, X., Lin, Y., Huang, Z., Liu, Q., Guo, W., Zhang, R., Zhao, W., Liang, L., Wei, X., Zhou, L., Mao, X., Wang, J., Wu, W., Pan, H., Yang, T., Zhang, H., Su, X., Liu, S., Zhang, W., Liu, L., Christensen, S. T., Fei, J., Liu, X., Fan, G., Li, H., Gu, Y., Wang, J., Yang, H., Pei, G., Xu, X., Zeng, A., Xu, M.
10.64898/2026.02.18.706529 — Posted: 2026-02-19 — Discussion: 2026-07-10  GigaScience
Breaking the cold chain: solutions for room temperature preservation of mosquitoes leading to high quality reference genomes
Teltscher, F., Korlevic, P., Sheerin, E., Makunin, A., Lawniczak, M. K. N.
10.1101/2025.07.03.662936 — Posted: 2025-07-05 — Discussion: 2026-07-10  GigaScience
METRIN-KG: A knowledge graph integrating plant metabolites, traits and biotic interactions
Tandon, D., Mendes de Farias, T., Allard, P.-M., Defossez, E.
10.1101/2025.08.20.671289 — Posted: 2025-08-25 — Discussion: 2026-07-10  GigaScience
FEDRANN: effective overlap graph construction based on dimensionality reduction and approximate nearest neighbors
Zhang, J.-Y., Miao, C., Qiu, T., Xia, X., He, L., He, J., Sun, Y., Zeng, T., Li, Y., Xu, X., Ruan, Y., Dong, Y.
10.1101/2025.05.30.656979 — Posted: 2025-06-02 — Discussion: 2026-07-10  GigaScience
scfetch: an R package to access and format single-cell RNA sequencing datasets from public repositories
Song, Y., Gao, J., Wang, J.
10.1101/2023.11.18.567507 — Posted: 2023-11-20 — Discussion: 2026-04-28  GigaScience
HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets
Arboleda-Baena, C., Borim Correa, F., Saraiva, J. P., Castillo, S., Kasmanas, J. C., Chatzinotas, A., Jurburg, S. D.
10.1101/2025.07.24.666487 — Posted: 2025-07-29 — Discussion: 2026-04-28  GigaScience
MicroFinder: Conserved gene-set mapping and assembly ordering for manual curation of bird microchromosomes
Mathers, T. C., Paulini, M., Sotero-Caio, C. G., Wood, J. M. D.
10.1101/2025.05.09.653066 — Posted: 2025-05-14 — Discussion: 2026-04-28  GigaScience
MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction
Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.
10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10  GigaScience
Patterns of aDNA Damage Through Time end Environments, lessons from herbarium specimens
Porrelli, S., Fornasiero, A., Le, P. H., Yin, W., Navarrete Rodriguez, M., Mohammed, N., Himmelbach, A., Clarke, A. C., Stein, N., Kersey, P. J., Wing, R. A., Gutaker, R. M.
10.1101/2025.10.26.684600 — Posted: 2025-10-26 — Discussion: 2026-04-10  GigaScience
Sex Chromosome Turnover and Structural Interspecific Genome Divergence Shapes Meiotic Outcomes in Hybridizing Cobitis
Schlebusch, S., Trifonov, V., Halenkova, Z., Klianitskaya, M., Dedukh, D., Ruiz Herrera, A., Alvarez Gonzalez, L., Pujol Infantes, G., Hribova, E., Andjel, L., Bartos, O., Pajer, P., Tichopad, T., Kulik, D., Kotusz, J., Dolezalkova-Kastankova, M., Bohne, A., Marta, A., Horna, P., Reifova, R., Guiguen, Y., Paces, J., Janko, K.
10.1101/2025.04.01.646337 — Posted: 2025-04-06 — Discussion: 2026-04-10  GigaScience

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