bioRxiv/medRxiv TRiP Review Activity

373 Reviews — GigaScience — All Subjects

Most recent first Previous |  Page 2: Articles 11-20  | Next

A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)
Simpson, A. M. R., Wood Charlson, E. M., Smith, M., Beilsmith, K., Koch, B., Walls, R. L., Wilhelm, R. C.
10.1101/2023.07.13.548835 — Posted: 2023-07-17 — Discussion: 2024-11-23  GigaScience
StereoSiTE: A framework to spatially and quantitatively profile the cellular neighborhood organized iTME
Liu, X., Qu, C., Liu, C., Zhu, N., Huang, H., Teng, F., Huang, C., Luo, B., Liu, X., Xu, Y., Xie, M., Xi, F., Li, M., Wu, L., Li, Y., Chen, A., Xu, X., Liao, S., Zhang, J.
10.1101/2022.12.31.522366 — Posted: 2022-12-31 — Discussion: 2024-11-23  GigaScience
Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)
Frazer, S. A., Baghbanzadeh, M., Rahnavard, A., Crandall, K. A., Oakley, T. H.
10.1101/2024.02.12.579993 — Posted: 2024-02-14 — Discussion: 2024-11-23  GigaScience
An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics
Zhang, C., Liu, L., Zhang, Y., Li, M., Fang, S., Kang, Q., Chen, A., Xu, X., Zhang, Y., Li, Y.
10.1101/2023.08.08.552402 — Posted: 2023-08-12 — Discussion: 2024-11-23  GigaScience
CoCoPyE: feature engineering for learning and prediction of genome quality indices
Birth, N., Leppich, N., Schirmacher, J., Andreae, N., Steinkamp, R., Blanke, M., Meinicke, P.
10.1101/2024.02.07.579156 — Posted: 2024-02-10 — Discussion: 2024-11-23  GigaScience
V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation
Fuhrmann, L., Jablonski, K. P., Topolsky, I., Batavia, A. A., Borgsmueller, N., Icer Baykal, P., Carrara, M., Chen, C., Dondi, A., Dragan, M., Dreifuss, D., John, A., Langer, B., Okoniewski, M., du Plessis, L., Schmitt, U., Singer, F., Stadler, T., Beerenwinkel, N.
10.1101/2023.10.16.562462 — Posted: 2023-10-16 — Discussion: 2024-11-10  GigaScience
TooManyCellsInteractive: a visualization tool for dynamic exploration of single-cell data
Klamann, C., Lau, C., Schwartz, G. W.
10.1101/2023.06.16.544954 — Posted: 2023-06-18 — Discussion: 2024-09-03  GigaScience
Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data
Assmann, E., Agrawal, S., Orschler, L., Böttcher, S., Lackner, S., Hölzer, M.
10.1101/2023.06.02.543047 — Posted: 2023-06-02 — Discussion: 2024-08-12  GigaScience
CAT - A Computational Anatomy Toolbox for the Analysis of Structural MRI Data
Gaser, C., Dahnke, R., Thompson, P. M., Kurth, F., Luders, E.
10.1101/2022.06.11.495736 — Posted: 2022-06-13 — Discussion: 2024-08-12  GigaScience
MOBFinder: a tool for MOB typing for plasmid metagenomic fragments based on language model
Feng, T., Wu, S., Zhou, H., Fang, Z.
10.1101/2023.12.06.570414 — Posted: 2023-12-07 — Discussion: 2024-08-12  GigaScience

Evaluation Sources