bioRxiv/medRxiv TRiP Review Activity

381 Reviews — GigaScience — All Subjects

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xRead: a coverage-guided approach for scalable construction of read overlapping graph
Kong, T., Liu, B., Wang, Y.
10.1101/2023.05.23.541864 — Posted: 2023-05-24 — Discussion: 2025-03-03  GigaScience
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae - Phoxinus phoxinus) provide evidence of haplotype diversity
Oriowo, T. O., Stange, M., Chrysostomakis, I., Martin, S., Brown, T., Winkler, S., Myers, E. W., Boehne, A., Kukowka, S.
10.1101/2023.11.30.569369 — Posted: 2023-12-01 — Discussion: 2025-02-10  GigaScience
Knowledge Graph-based Thought: a knowledge graph enhanced LLMs framework for pan-cancer question answering
Feng, Y., Zhou, L., Zheng, Y., He, R., Ma, C., Li, Y.
10.1101/2024.04.17.589873 — Posted: 2024-04-20 — Discussion: 2025-02-04  GigaScience
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure
Ji, Y., Shang, J., Guan, J., Zou, W., Liao, H., Tang, X., Sun, Y.
10.1101/2024.07.03.602011 — Posted: 2024-07-06 — Discussion: 2025-01-05  GigaScience
De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus
Borges, C. H. d. S., Utsunomia, R., Varani, A. M., Uliano da Silva, M., Guerra, L. V., Butzge, A. J., Gomez Agudelo, J. F., Manso, S., Freitas, M. V., Ariede, R. B., Mastrochirico-Filho, V. A., Penaloza, C., Barria, A., Porto-Foresti, F., Foresti, F., Hattori, R. S., Guiguen, Y., Houston, R. D., Hashimoto, D. T.
10.1101/2024.03.07.583869 — Posted: 2024-03-12 — Discussion: 2024-12-05  GigaScience
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
Zhang, D., Yu, N., Li, W., Sun, X., Zou, Q., Li, X., Yuan, Z., Zhang, W., Gao, R.
10.1101/2024.02.22.581503 — Posted: 2024-02-24 — Discussion: 2024-12-05  GigaScience
demuxSNP: supervised demultiplexing scRNAseq using cell hashing and SNPs
Lynch, M. P., Wang, Y., Gatto, L., Culhane, A. C.
10.1101/2024.04.22.590526 — Posted: 2024-04-26 — Discussion: 2024-12-05  GigaScience
CAT Bridge: an efficient toolkit for compound-transcript association mining from multi-omics data
Yang, B., Meng, T., Wang, X., Li, J., Zhao, S., Wang, Y., Yi, S., Zhou, Y., Zhang, Y., Li, L., Guo, L.
10.1101/2024.01.21.576587 — Posted: 2024-01-24 — Discussion: 2024-12-05  GigaScience
An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics
Zhang, C., Liu, L., Zhang, Y., Li, M., Fang, S., Kang, Q., Chen, A., Xu, X., Zhang, Y., Li, Y.
10.1101/2023.08.08.552402 — Posted: 2023-08-12 — Discussion: 2024-11-23  GigaScience
A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)
Simpson, A. M. R., Wood Charlson, E. M., Smith, M., Beilsmith, K., Koch, B., Walls, R. L., Wilhelm, R. C.
10.1101/2023.07.13.548835 — Posted: 2023-07-17 — Discussion: 2024-11-23  GigaScience

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