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416 Reviews — GigaScience — All Subjects

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Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence
Arantes, L. S., Brown, T., De Panis, D., Whiting, S. D., LaCasella, E. L., Carvajal, G. A., Kennedy, A., Edmunds, D., Bentley, B. P., Balacco, J., Whelan, C., Jain, N., Tilley, T., O'Toole, B., Traore, P., Jarvis, E. D., Berry, O., Dutton, P. H., Komoroske, L. M., Mazzoni, C. J.
10.1101/2025.03.26.644878 — Posted: 2025-03-28 — Discussion: 2025-09-30  GigaScience
SPEX: A modular end-to-end analytics tool for spatially resolved omics of tissues
Pechuan Jorge, X., Li, X., Risom, T., Zubkov, A., Tabatsky, E., Prilipko, A., Ye, X., Shi, Z., Nowicka, m., Peale, F., Hibar, D., Ziai, J., Jesudason, R., Orlova, D.
10.1101/2022.08.22.504841 — Posted: 2022-08-23 — Discussion: 2025-09-30  GigaScience
Nanopore- and AI-empowered metagenomic viability inference
Urel, H., Benassou, S., Reska, T., Marti, H., Rayo, E., Martin, E. J., Schloter, M., Ferguson, J. M., Kesselheim, S., Borel, N., Urban, L.
10.1101/2024.06.10.598221 — Posted: 2024-06-11 — Discussion: 2025-09-30  GigaScience
WaveSeekerNet: Accurate Prediction of Influenza A Virus Subtypes and Host Source Using Attention-Based Deep Learning
Nguyen, H.-H., Rudar, J., Lesperance, N., Vernygora, O., Taylor, G. W., Laing, C., Lapen, D., Leung, C. K., Lung, O.
10.1101/2025.02.25.639900 — Posted: 2025-02-28 — Discussion: 2025-09-30  GigaScience
A comprehensive water buffalo pangenome reveals extensive structural variation linked to population specific signatures of selection
Arshad, F., Jayaraman, S., Talenti, A., Owen, R., Mohsin, M., Mansoor, S., Asif, M., Prendergast, J. G.
10.1101/2025.05.04.652079 — Posted: 2025-05-09 — Discussion: 2025-09-30  GigaScience
CNSistent integration and feature extraction from somatic copy number profiles
Streck, A., Schwarz, R. F.
10.1101/2024.12.23.630118 — Posted: 2024-12-23 — Discussion: 2025-09-30  GigaScience
First chromosome-level genome assembly of the colonial tunicate Botryllus schlosseri
De Thier, O., Tawfeeq, M. M., Faure, R., Lebel, M., Dru, P., Blanchoud, S., Alie, A., Brown, F. D., Flot, J.-F., Tiozzo, S.
10.1101/2024.05.29.594498 — Posted: 2024-06-02 — Discussion: 2025-09-30  GigaScience
PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
Nasr, E., Henger, A., Gruning, B., Zierep, P., Batut, B.
10.1101/2024.06.26.600753 — Posted: 2024-06-30 — Discussion: 2025-09-30  GigaScience
Comparing Linear and Nonlinear Finite Element Models of Vertebral Strength Across the Thoracolumbar Spine: A Benchmark from Density-Calibrated Computed Tomography
Walle, M., Matheson, B. E., Boyd, S. K.
10.1101/2025.04.19.649449 — Posted: 2025-04-23 — Discussion: 2025-09-30  GigaScience
A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species
Chrysostomakis, I., Mozer, A., Bruno Di-Nizo, C., Fischer, D., Sargheini, N., von der Mark, L., Huettel, B., Astrin, J. J., Toepfer, T., Boehne, A.
10.1101/2025.01.22.633903 — Posted: 2025-01-24 — Discussion: 2025-09-30  GigaScience

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