bioRxiv/medRxiv TRiP Review Activity

432 Reviews — GigaScience — All Subjects

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Comparative evaluation of computational methods for reconstruction of human viral genomes
Sousa, M. J. P., Toppinen, M., Pyöriä, L., Hedman, K., Sajantila, A., Perdomo, M. F., Pratas, D.
10.1101/2025.01.17.633368 — Posted: 2025-01-22 — Discussion: 2026-01-05  GigaScience
A sulfatide-centered ultra-high resolution magnetic resonance MALDI imaging benchmark dataset for MS1-based lipid annotation tools
Gruber, L., Schmidt, S., Enzlein, T., Hopf, C.
10.1101/2025.10.20.683394 — Posted: 2025-10-20 — Discussion: 2026-01-05  GigaScience
Open RGB Imaging Workflow for Morphological and Morphometric Analysis of Fruits using AI: A Case Study on Almonds.
Mas-Gomez, J., Rubio, M., Dicenta, F., Martinez-Garcia, P. J.
10.1101/2025.05.05.652179 — Posted: 2025-05-06 — Discussion: 2026-01-05  GigaScience
Haplotype-resolved chromosome-level genome assemblies of four Diamesa species reveal the genetic basis of cold tolerance and high-altitude adaptations in arctic chironomids
Martin, S. L. F., La Torre, R., Danneels, B., Tooming-Klunderud, A., Skage, M., Kollias, S., Torresen, O. K., Falahati Anbaran, M., Stur, E., Jakobsen, K. S., Martin, M. D., Ekrem, T.
10.1101/2025.07.30.667619 — Posted: 2025-08-01 — Discussion: 2026-01-05  GigaScience
pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits
Tsang, I., Percival-Alwyn, L., Rawsthorne, S., Cockram, J., Leigh, F., Atkinson, J.
10.1101/2025.07.14.664697 — Posted: 2025-07-18 — Discussion: 2025-11-28  GigaScience
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
The enduring advantages of the SLOW5 file format for raw nanopore sequencing data
Gamaarachchi, H., Jenner, S., Samarakoon, H., Ferguson, J. M., Deveson, I. W.
10.1101/2025.06.30.662478 — Posted: 2025-07-04 — Discussion: 2025-10-30  GigaScience
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
Ultra-deep long-read metagenomics captures diverse taxonomic and biosynthetic potential of soil microbes
Bagci, C., Negri, T., Buena-Atienza, E., Gross, C., Ossowski, S., Ziemert, N.
10.1101/2025.05.28.656579 — Posted: 2025-05-28 — Discussion: 2025-10-30  GigaScience
GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience

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