bioRxiv/medRxiv TRiP Review Activity

36 Reviews — Review Commons — Bioinformatics

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Translational buffering tunes gene expression in mouse and human
Rao, S., Le, A. Y., Persyn, L., Cenik, C.
10.1101/2025.05.16.654561 — Posted: 2025-05-21 — Discussion: 2025-10-10  Review Commons
Studying cis-regulatory heterogeneity in single-cells at allelic resolution
Petrova, V., Niu, M., Vierbuchen, T., Wong, E. S.
10.1101/2025.04.16.649227 — Posted: 2025-04-17 — Discussion: 2025-08-11  Review Commons
Discovery of regulatory motifs associated with human insulator sites reveals the role of directional bias in insulator function
Osato, N., Hamada, M.
10.1101/2024.01.20.573595 — Posted: 2024-01-23 — Discussion: 2025-07-17  Review Commons
Expression quantitative trait locus mapping in recombinant gametes using single nucleus RNA sequencing
Parker, M. T., Amar, S., Campoy, J. A., Krause, K., Tusso, S., Marek, M., Huettel, B., Schneeberger, K.
10.1101/2024.08.02.606310 — Posted: 2024-08-06 — Discussion: 2025-01-02  Review Commons
Metagenome-assembled genomes of Estonian Microbiome cohort reveal novel species and their links with prevalent diseases
Pantiukh, K., Aasmets, O., Krigul, K. L., Org, E.
10.1101/2024.07.06.602324 — Posted: 2024-07-09 — Discussion: 2024-12-02  Review Commons
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts
Ancheta, S., Dorman, L., Le Treut, G., Gurung, A., Royer, L. A., Granados, A., Lange, M.
10.1101/2024.06.25.600667 — Posted: 2024-06-29 — Discussion: 2024-11-21  Review Commons
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning
van Dijk, R., Arevalo, J., Babadi, M., Carpenter, A. E., Singh, S.
10.1101/2023.11.14.567038 — Posted: 2023-11-16 — Discussion: 2024-08-01  Review Commons
Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
Radley, A., Smith, A.
10.1101/2023.10.12.562031 — Posted: 2023-10-16 — Discussion: 2024-03-18  Review Commons
Charting cellular differentiation trajectories with Ricci flow
Baptista, A., MacArthur, B. D., Banerji, C. R. S.
10.1101/2023.07.20.549833 — Posted: 2023-07-23 — Discussion: 2023-11-07  Review Commons
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Joodaki, M., Shaigan, M., Parra, V., D. Buelow, R., Kuppe, C., L. Holscher, D., Cheng, M., S. Nagai, J., Bouteldja, N., Tesar, V., Barratt, J., Roberts, I. S. D., Coppo, R., Kramann, R., Boor, P., G. Costa, I.
10.1101/2022.12.16.520739 — Posted: 2022-12-19 — Discussion: 2023-09-12  Review Commons

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