bioRxiv/medRxiv TRiP Review Activity

40 Reviews — Review Commons — Bioinformatics

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Mechanistic genotype-phenotype translation using hierarchical transformers
Lee, I., Wallace, Z., Park, S., Nam, H., Majithia, A., Ideker, T.
10.1101/2024.10.23.619940 — Posted: 2024-10-24 — Discussion: 2026-01-16  Review Commons
Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline
Holzinger, S., Schmutterer, L., Rothe, V. M., Watzlowik, M. T., Schwartz, U., Laengst, G.
10.1101/2025.08.13.670116 — Posted: 2025-08-14 — Discussion: 2025-11-27  Review Commons
MAVISp: Multi-layered Assessment of VarIants by Structure for proteins
Arnaudi, M., Beltrame, L., Degn, K., Utichi, M., Scrima, S., Sackett, P. W., Lambrughi, M., Tiberti, M., Papaleo, E.
10.1101/2022.10.22.513328 — Posted: 2022-10-24 — Discussion: 2025-11-20  Review Commons
ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference
Schäfer, P. S. L., Zimmermann, L., Burmedi, P. L., Walfisch, A., Goldenberg, N., Yonassi, S., Tamar, E. S., Adler, M., Tanevski, J., Ramirez Flores, R. O., Saez-Rodriguez, J.
10.1101/2025.09.08.674797 — Posted: 2025-09-13 — Discussion: 2025-11-14  Review Commons
Translational buffering tunes gene expression in mouse and human
Rao, S., Le, A. Y., Persyn, L., Cenik, C.
10.1101/2025.05.16.654561 — Posted: 2025-05-21 — Discussion: 2025-10-10  Review Commons
Studying cis-regulatory heterogeneity in single-cells at allelic resolution
Petrova, V., Niu, M., Vierbuchen, T., Wong, E. S.
10.1101/2025.04.16.649227 — Posted: 2025-04-17 — Discussion: 2025-08-11  Review Commons
Discovery of regulatory motifs associated with human insulator sites reveals the role of directional bias in insulator function
Osato, N., Hamada, M.
10.1101/2024.01.20.573595 — Posted: 2024-01-23 — Discussion: 2025-07-17  Review Commons
Expression quantitative trait locus mapping in recombinant gametes using single nucleus RNA sequencing
Parker, M. T., Amar, S., Campoy, J. A., Krause, K., Tusso, S., Marek, M., Huettel, B., Schneeberger, K.
10.1101/2024.08.02.606310 — Posted: 2024-08-06 — Discussion: 2025-01-02  Review Commons
Metagenome-assembled genomes of Estonian Microbiome cohort reveal novel species and their links with prevalent diseases
Pantiukh, K., Aasmets, O., Krigul, K. L., Org, E.
10.1101/2024.07.06.602324 — Posted: 2024-07-09 — Discussion: 2024-12-02  Review Commons
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts
Ancheta, S., Dorman, L., Le Treut, G., Gurung, A., Royer, L. A., Granados, A., Lange, M.
10.1101/2024.06.25.600667 — Posted: 2024-06-29 — Discussion: 2024-11-21  Review Commons

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