bioRxiv/medRxiv TRiP Review Activity

40 Reviews — Review Commons — Bioinformatics

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Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning
van Dijk, R., Arevalo, J., Babadi, M., Carpenter, A. E., Singh, S.
10.1101/2023.11.14.567038 — Posted: 2023-11-16 — Discussion: 2024-08-01  Review Commons
Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
Radley, A., Smith, A.
10.1101/2023.10.12.562031 — Posted: 2023-10-16 — Discussion: 2024-03-18  Review Commons
Charting cellular differentiation trajectories with Ricci flow
Baptista, A., MacArthur, B. D., Banerji, C. R. S.
10.1101/2023.07.20.549833 — Posted: 2023-07-23 — Discussion: 2023-11-07  Review Commons
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Joodaki, M., Shaigan, M., Parra, V., D. Buelow, R., Kuppe, C., L. Holscher, D., Cheng, M., S. Nagai, J., Bouteldja, N., Tesar, V., Barratt, J., Roberts, I. S. D., Coppo, R., Kramann, R., Boor, P., G. Costa, I.
10.1101/2022.12.16.520739 — Posted: 2022-12-19 — Discussion: 2023-09-12  Review Commons
The evolution of splice site sequence preference is linked to the U6 snRNA m6A methyltransferase METTL16
Parker, M. T., Fica, S. M., Barton, G. J., Simpson, G. G.
10.1101/2023.05.04.539401 — Posted: 2023-05-05 — Discussion: 2023-08-17  Review Commons
LimoRhyde2: genomic analysis of biological rhythms based on effect sizes
Obodo, D., Outland, E. H., Hughey, J. J.
10.1101/2023.02.02.526897 — Posted: 2023-02-03 — Discussion: 2023-05-26  Review Commons
CRISPR-Analytics (CRISPR-A): a platform for precise analytics and simulations for gene editing
Sanvicente, M., Garcia-Valiente, A., Jouide, S., Jaraba-Wallace, J., Bautista, E., Escobosa, M., Sanchez-Mejias, A., Güell, M.
10.1101/2022.09.02.506351 — Posted: 2022-09-03 — Discussion: 2023-01-12  Review Commons
The Effects of Nonlinear Signal on Expression-Based Prediction Performance
Heil, B. J., Crawford, J., Greene, C. S.
10.1101/2022.06.22.497194 — Posted: 2022-06-26 — Discussion: 2022-09-30  Review Commons
Identification of residue inversions in large phylogenies of duplicated proteins
Pascarelli, S., Laurino, P.
10.1101/2021.11.04.467263 — Posted: 2021-11-04 — Discussion: 2022-02-22  Review Commons
DynaMorph: self-supervised learning of morphodynamic states of live cells
Wu, Z., Chhun, B. B., Popova, G., Guo, S.-M., Kim, C., Yeh, L.-H., Nowakowski, T. J., Zou, J., Mehta, S. B.
10.1101/2020.07.20.213074 — Posted: 2021-07-28 — Discussion: 2021-11-07  Review Commons

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