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424 Reviews — GigaScience — All Subjects

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Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Foell, M. C., Moritz, L., Wollmann, T., Stillger, M., Vockert, N., Werner, M., Bronsert, P., Rohr, K., Gruening, B., Schilling, O.
10.1101/628719 — Posted: 2019-05-05 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
Comparative Analysis of common alignment tools for single cell RNA sequencing
Bruening, R. S., Tombor, L., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2021.02.15.430948 — Posted: 2021-02-16 — Discussion: 2022-03-14  GigaScience
ExTaxsI: an exploration tool of biodiversity molecular data
Agostinetto, G., Sandionigi, A., Chahed, A., Brusati, A., Parladori, E., Balech, B., Bruno, A., Pescini, D., Casiraghi, M.
10.1101/2020.11.05.369983 — Posted: 2020-11-06 — Discussion: 2022-03-14  GigaScience
Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework
Fahrner, M., Foell, M. C., Gruening, B., Bernt, M., Rost, H., Schilling, O.
10.1101/2021.07.21.453197 — Posted: 2021-07-22 — Discussion: 2022-03-14  GigaScience
Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J.-M., Guerif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D. B., Chagne, D., Van de Peer, Y., Troggio, M., Bianco, L.
10.1101/651778 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.
Etherington, G. J., Soranzo, N., Mohammed, S., Haerty, W., Davey, R., Di-Palma, F.
10.1101/724047 — Posted: 2019-08-04 — Discussion: 2022-03-14  GigaScience

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