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381 Reviews — GigaScience — All Subjects

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Machado: open source genomics data integration framework
Mudadu, M. d. A., Zerlotini, A.
10.1101/2020.05.08.084731 — Posted: 2020-05-10 — Discussion: 2022-01-31  GigaScience
Managing The Analysis Of High-Throughput Sequencing Data
Quilez, J., Vidal, E., Le Dily, F., Serra, F., Cuartero, Y., Stadhouders, R., Filion, G., Graf, T., Marti-Renom, M. A., Beato, M.
10.1101/136358 — Posted: 2017-05-10 — Discussion: 2022-01-31  GigaScience
rCASC: reproducible Classification Analysis of Single Cell sequencing data
Alessandri, L., Beccuti, M., Arigoni, M., Olivero, M., Romano, G., De Libero, G., Pace, L., Cordero, F., Calogero, R.
10.1101/430967 — Posted: 2018-10-03 — Discussion: 2022-01-31  GigaScience
Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets
Johnson, E. C., Wilt, M., Rodriguez, L. M., Norman-Tenazas, R., Rivera, C., Drenkow, N., Kleissas, D., LaGrow, T. J., Cowley, H. P., Downs, J., Matelsky, J., Hughes, M., Reilly, E., Wester, B., Dyer, E., Kording, K., Gray-Roncal, W.
10.1101/615161 — Posted: 2019-04-22 — Discussion: 2022-01-26  GigaScience
Morphometric analysis of Passiflora leaves I: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Daniel H Chitwood, Wagner C Otoni
10.1101/067512 — Posted: 2016-08-03 — Discussion: 2022-01-26  GigaScience
An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Giron, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S., Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P., Archibald, A. L.
10.1101/668921 — Posted: 2019-06-13 — Discussion: 2022-01-24  GigaScience
Genome Diversity in Ukraine
Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.
10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24  GigaScience
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing
Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.
10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore
Lang, D., Zhang, S., Ren, P., Liang, F., Sun, Z., Meng, G., Tan, Y., Hu, J., Li, X., Lai, Q., Han, L., Wang, D., Hu, F., Wang, W., Liu, S.
10.1101/2020.02.13.948489 — Posted: 2020-02-14 — Discussion: 2022-01-24  GigaScience

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