bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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A general minimal perfect hash function for canonical k-mers on arbitrary alphabets with an application to DNA sequences
Wittler, R.
10.1101/2023.03.09.531845 — Posted: 2023-03-12 — Discussion: 2023-09-18  Peer Community In
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Joodaki, M., Shaigan, M., Parra, V., D. Buelow, R., Kuppe, C., L. Holscher, D., Cheng, M., S. Nagai, J., Bouteldja, N., Tesar, V., Barratt, J., Roberts, I. S. D., Coppo, R., Kramann, R., Boor, P., G. Costa, I.
10.1101/2022.12.16.520739 — Posted: 2022-12-19 — Discussion: 2023-09-12  Review Commons
COVFlow: virus phylodynamics analyses from selected SARS-CoV-2 sequences
Danesh, G., Boennec, C., Verdurme, L., Roussel, M., Trombert, S., Visseaux, B., Haim-Boukobza, S., Alizon, S.
10.1101/2022.06.17.496544 — Posted: 2022-06-17 — Discussion: 2023-09-11  Peer Community In
Predicting Drug Repurposing Candidates and Their Mechanisms from A Biomedical Knowledge Graph
Ma, C., Zhou, Z., Liu, H., Koslicki, D.
10.1101/2022.11.29.518441 — Posted: 2022-12-02 — Discussion: 2023-09-04  GigaScience
GADMA2: more efficient and flexible demographic inference from genetic data
Noskova, E., Abramov, N., Iliutkin, S., Sidorin, A., Dobrynin, P., Ulyantsev, V.
10.1101/2022.06.14.496083 — Posted: 2022-06-17 — Discussion: 2023-09-04  GigaScience
Metaphor - A workflow for streamlined assembly and binning of metagenomes
Salazar, V. W., Shabban, B., del Mar Quiroga, M., Turnbull, R., Tescari, E., Marcelino, V. R., Verbruggen, H., Le Cao, K.-A.
10.1101/2023.02.09.527784 — Posted: 2023-02-10 — Discussion: 2023-08-21  GigaScience
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Himmelstein, D. S., Zietz, M., Rubinetti, V., Kloster, K., Heil, B. J., Alquaddoomi, F., Hu, D., Nicholson, D. N., Hao, Y., Sullivan, B. D., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522941 — Posted: 2023-01-07 — Discussion: 2023-08-21  GigaScience
ModCRE: a structure homology-modeling approach to predict TF binding in cis-regulatory elements
Fornes, O., Meseguer, A., Aguirre-Plans, J., GOHL, P., Mireia-Bota, P., MOLINA-FERNANDEZ, R., BONET, J., CHINCHILLA, A., PEGENAUTE, F., Gallego, O., Fernandez-Fuentes, N., Oliva, B.
10.1101/2022.04.17.488557 — Posted: 2022-04-17 — Discussion: 2023-08-21  eLife
SODAR: enabling, modeling, and managing multi-omics integration studies
Nieminen, M., Stolpe, O., Kuhring, M., Weiner, J., Pett, P., Beule, D., Holtgrewe, M.
10.1101/2022.08.19.504516 — Posted: 2022-08-22 — Discussion: 2023-08-21  GigaScience
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
Zeng, W., Gautam, A., Huson, D. H.
10.1101/2023.01.04.522704 — Posted: 2023-01-04 — Discussion: 2023-08-21  GigaScience

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