bioRxiv/medRxiv TRiP Review Activity

511 Reviews — All Partners — Bioinformatics

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Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
Radley, A., Smith, A.
10.1101/2023.10.12.562031 — Posted: 2023-10-16 — Discussion: 2024-03-18  Review Commons
Deep learning for rapid analysis of cell divisions in vivo during epithelial morphogenesis and repair
Turley, J. M., Chenchiah, I. V., Martin, P., Liverpool, T. B., Weavers, H.
10.1101/2023.03.20.533343 — Posted: 2023-03-23 — Discussion: 2024-03-12  eLife
Protein language model embedded geometric graphs power inter-protein contact prediction
Si, Y., Yan, C.
10.1101/2023.01.07.523121 — Posted: 2023-01-08 — Discussion: 2024-03-11  eLife
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience
A novel machine learning algorithm picks proteome signature to specifically identify cancer exosomes
Li, B., Kugeratski, F. G., Kalluri, R.
10.1101/2023.07.18.549557 — Posted: 2023-07-19 — Discussion: 2024-03-01  eLife
voyAGEr: free web interface for the analysis of age-related gene expression alterations in human tissues
Schneider, A. L., Saraiva-Agostinho, N., Barbosa-Morais, N. L.
10.1101/2022.12.22.521681 — Posted: 2022-12-23 — Discussion: 2024-02-29  eLife
SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics
Gong, C., Li, S., Wang, L., Zhao, F., Fang, S., Yuan, D., Zhao, Z., He, Q., Li, M., Liu, W., Li, Z., Xie, H., Liao, S., Chen, A., Zhang, Y., Li, Y., Xu, X.
10.1101/2023.08.20.554064 — Posted: 2023-08-21 — Discussion: 2024-02-26  Gigabyte
Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images
Zhang, B., Li, M., Kang, Q., Deng, Z., Qin, H., Su, K., Feng, X., Chen, L., Liu, H., Fang, S., Zhang, Y., Li, Y., Brix, S., Xu, X.
10.1101/2023.12.25.573324 — Posted: 2023-12-26 — Discussion: 2024-02-26  Gigabyte
BatchEval Pipeline: Batch Effect Evaluation Workflow for Multiple Datasets Joint Analysis
Zhang, C., Kang, Q., Li, M., Xie, H., Fang, S., Xu, X.
10.1101/2023.10.08.561465 — Posted: 2023-10-10 — Discussion: 2024-02-26  Gigabyte
Sensitive remote homology search by local alignment of small positional embeddings from protein language models
Johnson, S. R., Peshwa, M., Sun, Z.
10.1101/2023.07.26.550718 — Posted: 2023-07-29 — Discussion: 2024-02-21  eLife

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