bioRxiv/medRxiv TRiP Review Activity

522 Reviews — All Partners — Bioinformatics

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PPIscreenML: Structure-based screening for protein-protein interactions using AlphaFold
Mischley, V., Maier, J., Chen, J., Karanicolas, J.
10.1101/2024.03.16.585347 — Posted: 2024-03-17 — Discussion: 2024-07-04  eLife
ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection
Chu, J., Rong, J., Feng, X., Li, H.
10.1101/2023.11.01.565041 — Posted: 2023-11-03 — Discussion: 2024-07-01  GigaScience
Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients
Santos, R., Moreno-Torres, V., Pintos, I., Corral, O., de Mendoza, C., Soriano, V., Corpas, M.
10.1101/2024.01.28.577610 — Posted: 2024-01-29 — Discussion: 2024-07-01  Gigabyte
PhysiCell Studio: a graphical tool to make agent-based modeling more accessible
Heiland, R., Bergman, D. R., Lyons, B., Cass, J., L. Rocha, H., Ruscone, M., Noël, V., Macklin, P.
10.1101/2023.10.24.563727 — Posted: 2023-10-27 — Discussion: 2024-07-01  Gigabyte
Hecatomb: An End-to-End Research Platform for Viral Metagenomics
Roach, M. J., Beecroft, S., Mihindukulasuriya, K., Wang, L., Lima, L. F. O., Dinsdale, E. A., Edwards, R., Handley, S. A.
10.1101/2022.05.15.492003 — Posted: 2022-05-16 — Discussion: 2024-07-01  GigaScience
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data
Yang, C., Zhang, Z., Liao, H., Zhang, L.
10.1101/2022.08.10.503458 — Posted: 2022-08-13 — Discussion: 2024-07-01  GigaScience
MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations
Tiemann, J. K. S., Szczuka, M., Bouarroudj, L., Oussaren, M., Garcia, S., Howard, R. J., Delemotte, L., Lindahl, E., Baaden, M., Lindorff-Larsen, K., Chavent, M., Poulain, P.
10.1101/2023.05.02.538537 — Posted: 2023-05-02 — Discussion: 2024-06-28  eLife
Circulating Small Extracellular Vesicle RNA Profiling for the Detection of T1a stage Colorectal Cancer and Precancerous Advanced Adenoma
Min, L., Bu, F., Meng, J., Liu, X., Guo, Q., Zhao, L., Li, Z., Li, X., Zhu, S., Zhang, S.
10.1101/2023.06.04.543604 — Posted: 2023-06-06 — Discussion: 2024-06-27  eLife
H3-OPT: Accurate prediction of CDR-H3 loop structures of antibodies with deep learning
Tian, B., Chen, H., Fan, X., Zhu, S., Pei, Y., Zhang, X., Zhang, X., Liu, L., Qian, F.
10.1101/2023.08.19.553933 — Posted: 2023-08-21 — Discussion: 2024-05-30  eLife
Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience

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