bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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The reprogrammed mouse heart phosphoproteome in response to the chronic stress of markedly high cardiac-specific adenylyl cyclase type 8 overexpression
Qu, J.-H., Chakir, K., Tarasov, K. V., Riordon, D. R., Perino, M. G., Silvester, A. J., Lakatta, E. G.
10.1101/2022.04.29.488779 — Posted: 2022-05-01 — Discussion: 2023-11-22  eLife
Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens
Hassan, A. Z., Ward, H. N., Rahman, M., Billmann, M., Lee, Y., Myers, C. L.
10.1101/2023.02.22.529573 — Posted: 2023-02-22 — Discussion: 2023-11-21  EMBO Press
SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis
Akshay, A., Katoch, M., Abedi, M., Besic, M., Shekarchizadeh, N., Burkhard, F., Bigger-Allen, A., Adam, R., Monastyrskaya, K., Hashemi Gheinani, A.
10.1101/2023.06.28.533479 — Posted: 2023-06-28 — Discussion: 2023-11-13  GigaScience
Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Pereira, G. d. S., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G. d. S., Oliveira, T. d. P., Ferreira, G. C., Garcia, A. A. F.
10.1101/2022.11.24.517847 — Posted: 2022-11-25 — Discussion: 2023-11-13  GigaScience
Computational prediction of human deep intronic variation
Barbosa, P., Savisaar, R., Carmo-Fonseca, M., Fonseca, A.
10.1101/2023.02.17.528928 — Posted: 2023-02-17 — Discussion: 2023-11-13  GigaScience
cellsnake: a user-friendly tool for single cell RNA sequencing analysis
Umu, S. U., Rapp Vander-Elst, K., Karlsen, V. T., Chouliara, M., Baekkevold, E. S., Jahnsen, F. L., Domanska, D.
10.1101/2023.05.03.539204 — Posted: 2023-05-04 — Discussion: 2023-11-13  GigaScience
Charting cellular differentiation trajectories with Ricci flow
Baptista, A., MacArthur, B. D., Banerji, C. R. S.
10.1101/2023.07.20.549833 — Posted: 2023-07-23 — Discussion: 2023-11-07  Review Commons
Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants
Fu, Y., Bedo, J., Papenfuss, A. T., Rubin, A. F.
10.1101/2022.12.14.520494 — Posted: 2022-12-16 — Discussion: 2023-10-17  GigaScience
Bactabolize: A tool for high-throughput generation of bacterial strain-specific metabolic models
Vezina, B., Watts, S. C., Hawkey, J., Cooper, H. B., Judd, L. M., Jenney, A., Monk, J. M., Holt, K. E., Wyres, K. L.
10.1101/2023.02.26.530115 — Posted: 2023-02-27 — Discussion: 2023-09-19  eLife
PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins
Patramanis, I., Ramos-Madrigal, J., Cappellini, E., Racimo, F.
10.1101/2022.12.12.519721 — Posted: 2022-12-13 — Discussion: 2023-09-19  Peer Community In

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