bioRxiv/medRxiv TRiP Review Activity

522 Reviews — All Partners — Bioinformatics

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Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data
Assmann, E., Agrawal, S., Orschler, L., Böttcher, S., Lackner, S., Hölzer, M.
10.1101/2023.06.02.543047 — Posted: 2023-06-02 — Discussion: 2024-08-12  GigaScience
Detection and identification of transposable element transcripts using Long Read RNA-seq in Drosophila germline tissues
Rebollo, R., Cumunel, E., Mary, A., Sabot, F., Burlet, N., Gillet, B., Hughes, S., Siqueira Oliveira, D., Goubert, C., Fablet, M., Vieira, C., Lacroix, V.
10.1101/2023.05.27.542554 — Posted: 2023-05-30 — Discussion: 2024-08-06  Peer Community In
LukProt: A database of eukaryotic predicted proteins designed for investigations of animal origins
Sobala, L. F.
10.1101/2024.01.30.577650 — Posted: 2024-02-01 — Discussion: 2024-08-05  Peer Community In
Alleviating cell-free DNA sequencing biases with optimal transport
Passemiers, A., Jatsenko, T., Vanderstichele, A., Busschaert, P., Coosemans, A., Timmerman, D., Lambrechts, D., Raimondi, D., Vermeesch, J. R., Moreau, Y.
10.1101/2024.04.04.588204 — Posted: 2024-04-07 — Discussion: 2024-08-02  eLife
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning
van Dijk, R., Arevalo, J., Babadi, M., Carpenter, A. E., Singh, S.
10.1101/2023.11.14.567038 — Posted: 2023-11-16 — Discussion: 2024-08-01  Review Commons
Computational Engineering of a Therapeutic Antibody to Inhibit Multiple Mutants of HER2 Without Compromising Inhibition of the Canonical HER2
Peled, S., Guez-Haddad, J., Zur Biton, N., Nimrod, G., Fischman, S., Fastman, Y., Ofran, Y.
10.1101/2023.07.21.550003 — Posted: 2023-07-25 — Discussion: 2024-08-01  eLife
RedRibbon: A new rank-rank hypergeometric overlap pipeline to compare gene and transcript expression signatures
Piron, A., Szymczak, F., Alvelos, M. I., Defrance, M., Lenaerts, T., Eizirik, D. L., Cnop, M.
10.1101/2022.08.31.505818 — Posted: 2022-09-02 — Discussion: 2024-08-01  EMBO Press
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
LeRoy, N. J., Khoroshevskyi, O., O'Brien, A., Stepien, R., Arslan, A., Sheffield, N. C.
10.1101/2023.08.15.551388 — Posted: 2023-08-18 — Discussion: 2024-07-31  GigaScience
Robust clustering of transcriptomes through multiple testing
Kariotis, S., Tan, P. F., Lu, H., Rhodes, C. J., Wilkins, M. R., Lawrie, A., Wang, D.
10.1101/2022.12.19.519427 — Posted: 2022-12-20 — Discussion: 2024-07-31  GigaScience
gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
Arıkan, M., Muth, T.
10.1101/2023.12.03.569767 — Posted: 2023-12-05 — Discussion: 2024-07-31  GigaScience

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