bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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A novel machine learning algorithm picks proteome signature to specifically identify cancer exosomes
Li, B., Kugeratski, F. G., Kalluri, R.
10.1101/2023.07.18.549557 — Posted: 2023-07-19 — Discussion: 2024-03-01  eLife
voyAGEr: free web interface for the analysis of age-related gene expression alterations in human tissues
Schneider, A. L., Saraiva-Agostinho, N., Barbosa-Morais, N. L.
10.1101/2022.12.22.521681 — Posted: 2022-12-23 — Discussion: 2024-02-29  eLife
BatchEval Pipeline: Batch Effect Evaluation Workflow for Multiple Datasets Joint Analysis
Zhang, C., Kang, Q., Li, M., Xie, H., Fang, S., Xu, X.
10.1101/2023.10.08.561465 — Posted: 2023-10-10 — Discussion: 2024-02-26  Gigabyte
SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics
Gong, C., Li, S., Wang, L., Zhao, F., Fang, S., Yuan, D., Zhao, Z., He, Q., Li, M., Liu, W., Li, Z., Xie, H., Liao, S., Chen, A., Zhang, Y., Li, Y., Xu, X.
10.1101/2023.08.20.554064 — Posted: 2023-08-21 — Discussion: 2024-02-26  Gigabyte
Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images
Zhang, B., Li, M., Kang, Q., Deng, Z., Qin, H., Su, K., Feng, X., Chen, L., Liu, H., Fang, S., Zhang, Y., Li, Y., Brix, S., Xu, X.
10.1101/2023.12.25.573324 — Posted: 2023-12-26 — Discussion: 2024-02-26  Gigabyte
Sensitive remote homology search by local alignment of small positional embeddings from protein language models
Johnson, S. R., Peshwa, M., Sun, Z.
10.1101/2023.07.26.550718 — Posted: 2023-07-29 — Discussion: 2024-02-21  eLife
Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
MetaPredict: A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes
Geller-McGrath, D., Konwar, K., Edgcomb, V. P., Pachiadaki, M., Roddy, J., Wheeler, T., McDermott, J. E.
10.1101/2022.12.21.521254 — Posted: 2022-12-22 — Discussion: 2024-02-09  eLife

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