bioRxiv/medRxiv TRiP Review Activity

506 Reviews — All Partners — Bioinformatics

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Identifying images in the biology literature that are problematic for people with a color-vision deficiency
Stevens, H. P., Winegar, C. V., Oakley, A. F., Piccolo, S. R.
10.1101/2023.11.29.569308 — Posted: 2023-11-30 — Discussion: 2024-08-29  eLife
ImmCellTyper: an integrated computational pipeline for systematic mining of Mass Cytometry data to assist deep immune profiling
Sun, J., Choy, D., Sompairac, N., Jamshidi, S., Mishto, M., Kordasti, S.
10.1101/2024.01.15.575790 — Posted: 2024-01-17 — Discussion: 2024-08-13  eLife
Deciphering Cancer Genomes with GenomeSpy: A Grammar-Based Visualization Toolkit
Lavikka, K., Oikkonen, J., Li, Y., Muranen, T., Micoli, G., Marchi, G., Lahtinen, A., Huhtinen, K., Lehtonen, R., Hietanen, S., Hynninen, J., Virtanen, A., Hautaniemi, S.
10.1101/2023.10.06.561159 — Posted: 2023-10-06 — Discussion: 2024-08-12  GigaScience
Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data
Assmann, E., Agrawal, S., Orschler, L., Böttcher, S., Lackner, S., Hölzer, M.
10.1101/2023.06.02.543047 — Posted: 2023-06-02 — Discussion: 2024-08-12  GigaScience
MOBFinder: a tool for MOB typing for plasmid metagenomic fragments based on language model
Feng, T., Wu, S., Zhou, H., Fang, Z.
10.1101/2023.12.06.570414 — Posted: 2023-12-07 — Discussion: 2024-08-12  GigaScience
Detection and identification of transposable element transcripts using Long Read RNA-seq in Drosophila germline tissues
Rebollo, R., Cumunel, E., Mary, A., Sabot, F., Burlet, N., Gillet, B., Hughes, S., Siqueira Oliveira, D., Goubert, C., Fablet, M., Vieira, C., Lacroix, V.
10.1101/2023.05.27.542554 — Posted: 2023-05-30 — Discussion: 2024-08-06  Peer Community In
LukProt: A database of eukaryotic predicted proteins designed for investigations of animal origins
Sobala, L. F.
10.1101/2024.01.30.577650 — Posted: 2024-02-01 — Discussion: 2024-08-05  Peer Community In
Alleviating cell-free DNA sequencing biases with optimal transport
Passemiers, A., Jatsenko, T., Vanderstichele, A., Busschaert, P., Coosemans, A., Timmerman, D., Lambrechts, D., Raimondi, D., Vermeesch, J. R., Moreau, Y.
10.1101/2024.04.04.588204 — Posted: 2024-04-07 — Discussion: 2024-08-02  eLife
Computational Engineering of a Therapeutic Antibody to Inhibit Multiple Mutants of HER2 Without Compromising Inhibition of the Canonical HER2
Peled, S., Guez-Haddad, J., Zur Biton, N., Nimrod, G., Fischman, S., Fastman, Y., Ofran, Y.
10.1101/2023.07.21.550003 — Posted: 2023-07-25 — Discussion: 2024-08-01  eLife
RedRibbon: A new rank-rank hypergeometric overlap pipeline to compare gene and transcript expression signatures
Piron, A., Szymczak, F., Alvelos, M. I., Defrance, M., Lenaerts, T., Eizirik, D. L., Cnop, M.
10.1101/2022.08.31.505818 — Posted: 2022-09-02 — Discussion: 2024-08-01  EMBO Press

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