bioRxiv/medRxiv TRiP Review Activity

522 Reviews — All Partners — Bioinformatics

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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Barnabe, C., Sempere, G., Manzanilla, V., Moo Millan, J., Amblard-Rambert, A., Waleckx, E.
10.1101/2024.02.08.579441 — Posted: 2024-02-11 — Discussion: 2024-10-23  Peer Community In
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Rodriguez Palomo, I., Nair, B. A. B., Chiang, Y., Dekker, J., Dartigues, B., Mackie, M., Evans, M., Macleod, R., Olsen, J., Collins, M. J.
10.1101/2023.12.15.571577 — Posted: 2023-12-15 — Discussion: 2024-10-21  Peer Community In
Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
Mansueto, L., Kretzschmar, T., Mauleon, R., King, G. J.
10.1101/2024.10.02.616368 — Posted: 2024-10-03 — Discussion: 2024-10-20  Gigabyte
Unveiling the influence of tumor and immune signatures on immune checkpoint therapy in advanced lung cancer
Kim, N., Park, S., Jo, A., Eum, H. H., Kim, H. K., Lee, K., Cho, J. H., Ku, B. M., Jung, H. A., Sun, J.-M., Lee, S.-H., Ahn, J. S., Lee, J.-I., Choi, J. W., Jeong, D., Na, M., Kang, H., Kim, J. Y., Choi, J. K., Lee, H.-O., Ahn, M.-J.
10.1101/2024.04.15.589544 — Posted: 2024-04-20 — Discussion: 2024-10-14  eLife
Coenzyme-Protein Interactions since Early Life
Sanchez Rocha, A. C., Makarov, M., Pravda, L., Novotny, M., Hlouchova, K.
10.1101/2023.10.28.563965 — Posted: 2023-11-01 — Discussion: 2024-10-14  eLife
Benchmarking tRNA-Seq quantification approaches by realistic tRNA-Seq data simulation identifies two novel approaches with higher accuracy
Smith, T. S., Monti, M., Willis, A. E., Kalmar, L.
10.1101/2023.12.13.571582 — Posted: 2023-12-14 — Discussion: 2024-10-07  eLife
HairSplitter: haplotype assembly from long, noisy reads
Faure, R., Lavenier, D., Flot, J.-F.
10.1101/2024.02.13.580067 — Posted: 2024-02-14 — Discussion: 2024-10-02  Peer Community In
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks
De Waele, G., Menschaert, G., Waegeman, W.
10.1101/2023.09.28.559916 — Posted: 2023-09-29 — Discussion: 2024-10-02  eLife
A comprehensive dimensional reduction framework to learn single-cell phenotypic topology uncovers T cell diversity
Sidarta-Oliveira, D., Velloso, L. A.
10.1101/2022.03.14.484134 — Posted: 2022-03-17 — Discussion: 2024-09-30  eLife
Establishing comprehensive quaternary structural proteomes from genome sequence
Catoiu, E. A., Mih, N., Lu, M., Palsson, B. O.
10.1101/2024.04.24.590993 — Posted: 2024-04-28 — Discussion: 2024-09-25  eLife

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