bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions
Zhang, P., Bang, S., Cai, M., Lee, H.
10.1101/2023.04.12.536635 — Posted: 2023-04-14 — Discussion: 2024-04-23  eLife
Phantasus: web-application for visual and interactive gene expression analysis
Kleverov, M., Zenkova, D., Kamenev, V., Sablina, M., Artyomov, M., Sergushichev, A.
10.1101/2022.12.10.519861 — Posted: 2022-12-12 — Discussion: 2024-04-23  eLife
Revisiting pangenome openness with k-mers
Parmigiani, L., Wittler, R., Stoye, J.
10.1101/2022.11.15.516472 — Posted: 2022-11-16 — Discussion: 2024-04-10  Peer Community In
Spotless: a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
Sang-aram, C., Browaeys, R., Seurinck, R., Saeys, Y.
10.1101/2023.03.22.533802 — Posted: 2023-03-24 — Discussion: 2024-04-04  eLife
Genome-scale annotation of protein binding sites via language model and geometric deep learning
Yuan, Q., Tian, C., Yang, Y.
10.1101/2023.11.02.565344 — Posted: 2023-11-05 — Discussion: 2024-03-25  eLife
Molecular Property Diagnostic Suite for COVID-19 (MPDSCOVID-19): An open access disease specific drug discovery portal
Sastry, G. N., Priyadarsinee, L., Jamir, E., Nagamani, S., Mahanta, H. J., Kumar, N., John, L., Sarma, H., Kumar, A., Gaur, A. S., Sahoo, R., Vaikundamani, S., Murugan, N. A., Priyakumar, U. D., Raghava, G. P. S., Bharatam, P., Ramakrishnan, P., Subramanian, V., Sastry, G. M.
10.1101/2023.08.29.555437 — Posted: 2023-08-30 — Discussion: 2024-03-18  Gigabyte
Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
Radley, A., Smith, A.
10.1101/2023.10.12.562031 — Posted: 2023-10-16 — Discussion: 2024-03-18  Review Commons
Deep learning for rapid analysis of cell divisions in vivo during epithelial morphogenesis and repair
Turley, J. M., Chenchiah, I. V., Martin, P., Liverpool, T. B., Weavers, H.
10.1101/2023.03.20.533343 — Posted: 2023-03-23 — Discussion: 2024-03-12  eLife
Protein language model embedded geometric graphs power inter-protein contact prediction
Si, Y., Yan, C.
10.1101/2023.01.07.523121 — Posted: 2023-01-08 — Discussion: 2024-03-11  eLife
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience

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