bioRxiv/medRxiv TRiP Review Activity

522 Reviews — All Partners — Bioinformatics

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A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)
Simpson, A. M. R., Wood Charlson, E. M., Smith, M., Beilsmith, K., Koch, B., Walls, R. L., Wilhelm, R. C.
10.1101/2023.07.13.548835 — Posted: 2023-07-17 — Discussion: 2024-11-23  GigaScience
Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)
Frazer, S. A., Baghbanzadeh, M., Rahnavard, A., Crandall, K. A., Oakley, T. H.
10.1101/2024.02.12.579993 — Posted: 2024-02-14 — Discussion: 2024-11-23  GigaScience
TSTA: Thread and SIMD-Based Trapezoidal Pairwise/Multiple Sequence Alignment Method
Peiyu, Z., Liu, J., Deng, W., Ruan, J.
10.1101/2024.09.18.613655 — Posted: 2024-09-22 — Discussion: 2024-11-21  Gigabyte
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts
Ancheta, S., Dorman, L., Le Treut, G., Gurung, A., Royer, L. A., Granados, A., Lange, M.
10.1101/2024.06.25.600667 — Posted: 2024-06-29 — Discussion: 2024-11-21  Review Commons
NucBalancer: Streamlining Barcode Sequence Selection for Optimal Sample Pooling for Sequencing
Gupta, S., Sharma, A.
10.1101/2024.09.06.611747 — Posted: 2024-09-12 — Discussion: 2024-11-21  Gigabyte
SMARTER-database: a tool to explore genomic diversity in small ruminants
Cozzi, P., Manunza, A., Ramirez-Diaz, J., Tsartsianidou, V., Gkagkavouzis, K., Peraza, P., Johansson, A. M., Arranz, J. J., Freire, F., Kusza, S., Biscarini, F., Peters, L., Tosser-Klopp, G., Ciappesoni, G., Triantafyllidis, A., Rupp, R., Servin, B., Stella, A.
10.1101/2024.09.01.610681 — Posted: 2024-09-03 — Discussion: 2024-11-21  Gigabyte
Chromosome-level genome assembly and annotation of the crested gecko, Correlophus ciliatus, a lizard incapable of tail regeneration
Gumangan, M., Loztio, T., Pan, Z.
10.1101/2024.09.28.615630 — Posted: 2024-09-30 — Discussion: 2024-11-21  Gigabyte
Faster model-based estimation of ancestry proportions
Meisner, J., Santander, C., Refoyo Martinez, A.
10.1101/2024.07.08.602454 — Posted: 2024-07-11 — Discussion: 2024-11-18  Peer Community In
V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation
Fuhrmann, L., Jablonski, K. P., Topolsky, I., Batavia, A. A., Borgsmueller, N., Icer Baykal, P., Carrara, M., Chen, C., Dondi, A., Dragan, M., Dreifuss, D., John, A., Langer, B., Okoniewski, M., du Plessis, L., Schmitt, U., Singer, F., Stadler, T., Beerenwinkel, N.
10.1101/2023.10.16.562462 — Posted: 2023-10-16 — Discussion: 2024-11-10  GigaScience
A multi-gene predictive model for the radiation sensitivity of nasopharyngeal carcinoma based on machine learning
Li, K., Liang, J., Li, N., Fang, J., Zhou, X., zhang, j., Lin, A., Luo, P., Meng, H.
10.1101/2024.06.10.598247 — Posted: 2024-06-11 — Discussion: 2024-11-05  eLife

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