bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients
Santos, R., Moreno-Torres, V., Pintos, I., Corral, O., de Mendoza, C., Soriano, V., Corpas, M.
10.1101/2024.01.28.577610 — Posted: 2024-01-29 — Discussion: 2024-07-01  Gigabyte
MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations
Tiemann, J. K. S., Szczuka, M., Bouarroudj, L., Oussaren, M., Garcia, S., Howard, R. J., Delemotte, L., Lindahl, E., Baaden, M., Lindorff-Larsen, K., Chavent, M., Poulain, P.
10.1101/2023.05.02.538537 — Posted: 2023-05-02 — Discussion: 2024-06-28  eLife
Circulating Small Extracellular Vesicle RNA Profiling for the Detection of T1a stage Colorectal Cancer and Precancerous Advanced Adenoma
Min, L., Bu, F., Meng, J., Liu, X., Guo, Q., Zhao, L., Li, Z., Li, X., Zhu, S., Zhang, S.
10.1101/2023.06.04.543604 — Posted: 2023-06-06 — Discussion: 2024-06-27  eLife
H3-OPT: Accurate prediction of CDR-H3 loop structures of antibodies with deep learning
Tian, B., Chen, H., Fan, X., Zhu, S., Pei, Y., Zhang, X., Zhang, X., Liu, L., Qian, F.
10.1101/2023.08.19.553933 — Posted: 2023-08-21 — Discussion: 2024-05-30  eLife
Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
Streamlining remote nanopore data access with slow5curl
Wong, B., Ferguson, J. M., Gamaarachchi, H., Deveson, I. W.
10.1101/2023.11.28.569128 — Posted: 2023-11-30 — Discussion: 2024-05-13  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience
SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome
Wang, X., Liu, Q., Li, A., Ruan, J.
10.1101/2020.05.25.115592 — Posted: 2020-05-28 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
Single cell transcriptome analysis of cavernous tissues reveals the key roles of pericytes in diabetic erectile dysfunction
Bae, S.-G., Yin, G.-N., Ock, J., Suh, J.-K., Ryu, J.-K., Park, J.
10.1101/2023.05.25.542355 — Posted: 2023-05-26 — Discussion: 2024-05-02  eLife

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