bioRxiv/medRxiv TRiP Review Activity

515 Reviews — All Partners — Bioinformatics

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Single-Cell and Spatial Transcriptomic Analyses Reveals the Dynamic Transcript Profiles of Myocardial Lymphangiogenesis post Myocardial Infarction
Jiaqi, H., Zhang, D., Song, H., Liu, Z., Liu, D., Zhang, X., Zhao, X., Zhang, Y., Liu, J., Xu, J., Yan, C., Han, Y.
10.1101/2024.06.10.598235 — Posted: 2024-06-11 — Discussion: 2024-11-25  eLife
A data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence (MISIP)
Simpson, A. M. R., Wood Charlson, E. M., Smith, M., Beilsmith, K., Koch, B., Walls, R. L., Wilhelm, R. C.
10.1101/2023.07.13.548835 — Posted: 2023-07-17 — Discussion: 2024-11-23  GigaScience
Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)
Frazer, S. A., Baghbanzadeh, M., Rahnavard, A., Crandall, K. A., Oakley, T. H.
10.1101/2024.02.12.579993 — Posted: 2024-02-14 — Discussion: 2024-11-23  GigaScience
CoCoPyE: feature engineering for learning and prediction of genome quality indices
Birth, N., Leppich, N., Schirmacher, J., Andreae, N., Steinkamp, R., Blanke, M., Meinicke, P.
10.1101/2024.02.07.579156 — Posted: 2024-02-10 — Discussion: 2024-11-23  GigaScience
An Unsupervised Contrastive Learning Model for Data Integration of Spatially Resolved Transcriptomics
Zhang, C., Liu, L., Zhang, Y., Li, M., Fang, S., Kang, Q., Chen, A., Xu, X., Zhang, Y., Li, Y.
10.1101/2023.08.08.552402 — Posted: 2023-08-12 — Discussion: 2024-11-23  GigaScience
SMARTER-database: a tool to explore genomic diversity in small ruminants
Cozzi, P., Manunza, A., Ramirez-Diaz, J., Tsartsianidou, V., Gkagkavouzis, K., Peraza, P., Johansson, A. M., Arranz, J. J., Freire, F., Kusza, S., Biscarini, F., Peters, L., Tosser-Klopp, G., Ciappesoni, G., Triantafyllidis, A., Rupp, R., Servin, B., Stella, A.
10.1101/2024.09.01.610681 — Posted: 2024-09-03 — Discussion: 2024-11-21  Gigabyte
Chromosome-level genome assembly and annotation of the crested gecko, Correlophus ciliatus, a lizard incapable of tail regeneration
Gumangan, M., Loztio, T., Pan, Z.
10.1101/2024.09.28.615630 — Posted: 2024-09-30 — Discussion: 2024-11-21  Gigabyte
TSTA: Thread and SIMD-Based Trapezoidal Pairwise/Multiple Sequence Alignment Method
Peiyu, Z., Liu, J., Deng, W., Ruan, J.
10.1101/2024.09.18.613655 — Posted: 2024-09-22 — Discussion: 2024-11-21  Gigabyte
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts
Ancheta, S., Dorman, L., Le Treut, G., Gurung, A., Royer, L. A., Granados, A., Lange, M.
10.1101/2024.06.25.600667 — Posted: 2024-06-29 — Discussion: 2024-11-21  Review Commons
NucBalancer: Streamlining Barcode Sequence Selection for Optimal Sample Pooling for Sequencing
Gupta, S., Sharma, A.
10.1101/2024.09.06.611747 — Posted: 2024-09-12 — Discussion: 2024-11-21  Gigabyte

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