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138 Reviews — eLife — Bioinformatics

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CausalCell: applying causal discovery to single-cell analyses
Wen, Y., Huang, J., Zhang, H., Guo, S., Elyahu, Y., Monsonego, A., Ding, Y., ZHU, H.
10.1101/2022.08.19.504494 — Posted: 2022-08-19 — Discussion: 2022-12-13  eLife
Identify non-mutational p53 loss of function in human cancers
Li, Q., Zhang, Y., Zhang, Z., Oberg, A., Kozono, D., Lu, H., Sarkaria, J. N., Ma, L., Wang, L.
10.1101/2022.07.28.501874 — Posted: 2022-07-31 — Discussion: 2022-12-04  eLife
Longitudinal fundus imaging and its genome-wide association analysis provide evidence for a human retinal aging clock
Ahadi, S., Wilson, K. A., Babenko, B., McLean, C. Y., Bryant, D., Pritchard, O., Carrera, E. M., Lamy, R., Stewart, J. M., Varadarajan, A., Berndl, M., Kapahi, P., Bashir, A.
10.1101/2022.07.25.501485 — Posted: 2022-07-27 — Discussion: 2022-12-02  eLife
Generative power of a protein language model trained on multiple sequence alignments
Sgarbossa, D., Lupo, U., Bitbol, A.-F.
10.1101/2022.04.14.488405 — Posted: 2022-04-15 — Discussion: 2022-11-22  eLife
scatterHatch: an R/Bioconductor package for colorblind accessible visualization of single-cell data
Guha, T., Fertig, E., Deshpande, A.
10.1101/2021.10.07.463279 — Posted: 2021-10-07 — Discussion: 2022-11-09  eLife
Lack of evidence for increased transcriptional noise in aged tissues
Ibanez-Sole, O., Ascension, A. M., Arauzo-Bravo, M. J., Izeta, A.
10.1101/2022.05.18.492432 — Posted: 2022-05-19 — Discussion: 2022-11-08  eLife
Neuroendocrinology of the lung revealed by single cell RNA sequencing
Kuo, C. S., Darmanis, S., Diaz de Arce, A., Liu, Y., Almanzar, N., Wu, T. T. H., Quake, S. R., Krasnow, M. A.
10.1101/2022.03.08.483399 — Posted: 2022-03-10 — Discussion: 2022-10-31  eLife
T cell receptor convergence is an indicator of antigen-specific T cell response in cancer immunotherapies
Pan, M. Y., Li, B.
10.1101/2022.06.15.495325 — Posted: 2022-06-16 — Discussion: 2022-10-23  eLife
Taxonium: a web-based tool for exploring large phylogenetic trees
Sanderson, T.
10.1101/2022.06.03.494608 — Posted: 2022-06-03 — Discussion: 2022-10-20  eLife
Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade and the role of insertions and extensions in diversification
Burnim, A. A., Spence, M. A., Xu, D., Jackson, C., Ando, N.
10.1101/2022.04.23.489257 — Posted: 2022-04-23 — Discussion: 2022-08-11  eLife

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