bioRxiv/medRxiv TRiP Review Activity

133 Reviews — eLife — Bioinformatics

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Lack of evidence for increased transcriptional noise in aged tissues
Ibanez-Sole, O., Ascension, A. M., Arauzo-Bravo, M. J., Izeta, A.
10.1101/2022.05.18.492432 — Posted: 2022-05-19 — Discussion: 2022-11-08  eLife
Neuroendocrinology of the lung revealed by single cell RNA sequencing
Kuo, C. S., Darmanis, S., Diaz de Arce, A., Liu, Y., Almanzar, N., Wu, T. T. H., Quake, S. R., Krasnow, M. A.
10.1101/2022.03.08.483399 — Posted: 2022-03-10 — Discussion: 2022-10-31  eLife
T cell receptor convergence is an indicator of antigen-specific T cell response in cancer immunotherapies
Pan, M. Y., Li, B.
10.1101/2022.06.15.495325 — Posted: 2022-06-16 — Discussion: 2022-10-23  eLife
Taxonium: a web-based tool for exploring large phylogenetic trees
Sanderson, T.
10.1101/2022.06.03.494608 — Posted: 2022-06-03 — Discussion: 2022-10-20  eLife
Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade and the role of insertions and extensions in diversification
Burnim, A. A., Spence, M. A., Xu, D., Jackson, C., Ando, N.
10.1101/2022.04.23.489257 — Posted: 2022-04-23 — Discussion: 2022-08-11  eLife
Evaluation of in silico predictors on short nucleotide variants in HBA1, HBA2 and HBB associated with haemoglobinopathies
Tamana, S., Xenophontos, M., Minaidou, A., Stephanou, C., Harteveld, C. L., Bento, C., Traeger-Synodinos, J., Fylaktou, I., Yasin, N. M., Hamid, F. S. A., Esa, E., Halim-Fikri, H., Zilfalil, B. A., Kakouri, A. C., ClinGen Hemoglobinopathy VCEP, , Kleanthous, M., Kountouris, P.
10.1101/2022.04.07.484934 — Posted: 2022-04-09 — Discussion: 2022-08-02  eLife
Comprehensive machine-learning survival framework develop a consensus model in large scale multi-center cohorts for pancreatic cancer
Wang, L., Liu, Z., Liang, R., Wang, W., Zhu, R., Li, J., Xing, Z., Weng, S., Han, X., Sun, Y.-l.
10.1101/2022.05.15.492020 — Posted: 2022-05-16 — Discussion: 2022-07-18  eLife
Nomograms of Human Hippocampal Volume Shifted by Polygenic Scores
Janahi, M., Aksman, L. M., Schott, J., Altmann, A.
10.1101/2022.02.17.480931 — Posted: 2022-02-19 — Discussion: 2022-06-30  eLife
Systematic lncRNA mapping to genome-wide co-essential pathways uncovers cancer dependency on uncharacterized lncRNAs
Mitra, R., Adams, C. M., Eischen, C. M.
10.1101/2022.02.03.478941 — Posted: 2022-02-04 — Discussion: 2022-05-12  eLife
Benchmarking supervised signature-scoring methods for single-cell RNA sequencing data in cancer
Zheng, S., Nighat, N., Ye, Z., Chen, Y., Wang, X.
10.1101/2021.06.29.450404 — Posted: 2021-07-01 — Discussion: 2022-02-18  eLife

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