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132 Reviews — eLife — Bioinformatics

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ProteInfer: deep networks for protein functional inference
Sanderson, T., Bileschi, M. L., Belanger, D., Colwell, L.
10.1101/2021.09.20.461077 — Posted: 2021-09-23 — Discussion: 2023-02-08  eLife
CriSNPr: a single interface for the curated and de-novo design of gRNAs for CRISPR diagnostics using diverse Cas systems
Chakraborty, D., Ansari, A. H., Kumar, M., Sarkar, S., Maiti, S.
10.1101/2022.02.17.479653 — Posted: 2022-02-17 — Discussion: 2023-01-25  eLife
Network-based multi-omics integration reveals metabolic risk profile within treated HIV-infection
Mikaeloff, F., Gelpi, M., Benfeitas, R., Knudsen, A. D., Vestad, B., Hogh, J., Hov, J., Benfield, T., Murray, D., Giske, C. G., Mardinoglu, A., Troseid, M., Poulsen, S. D., Neogi, U.
10.1101/2022.06.08.495246 — Posted: 2022-06-13 — Discussion: 2023-01-04  eLife
Decoding rRNA Sequences for Improved Metagenomics in Sylvatic Mosquito Species
Koh, C., Frangeul, L., Blanc, H., Ngoagouni, C., Boyer, S., Dussart, P., Grau, N., Girod, R., Duchemin, J.-B., Saleh, M. C.
10.1101/2022.02.01.478639 — Posted: 2022-02-03 — Discussion: 2022-12-30  eLife
CausalCell: applying causal discovery to single-cell analyses
Wen, Y., Huang, J., Zhang, H., Guo, S., Elyahu, Y., Monsonego, A., Ding, Y., ZHU, H.
10.1101/2022.08.19.504494 — Posted: 2022-08-19 — Discussion: 2022-12-13  eLife
Identify non-mutational p53 loss of function in human cancers
Li, Q., Zhang, Y., Zhang, Z., Oberg, A., Kozono, D., Lu, H., Sarkaria, J. N., Ma, L., Wang, L.
10.1101/2022.07.28.501874 — Posted: 2022-07-31 — Discussion: 2022-12-04  eLife
Longitudinal fundus imaging and its genome-wide association analysis provide evidence for a human retinal aging clock
Ahadi, S., Wilson, K. A., Babenko, B., McLean, C. Y., Bryant, D., Pritchard, O., Carrera, E. M., Lamy, R., Stewart, J. M., Varadarajan, A., Berndl, M., Kapahi, P., Bashir, A.
10.1101/2022.07.25.501485 — Posted: 2022-07-27 — Discussion: 2022-12-02  eLife
Generative power of a protein language model trained on multiple sequence alignments
Sgarbossa, D., Lupo, U., Bitbol, A.-F.
10.1101/2022.04.14.488405 — Posted: 2022-04-15 — Discussion: 2022-11-22  eLife
scatterHatch: an R/Bioconductor package for colorblind accessible visualization of single-cell data
Guha, T., Fertig, E., Deshpande, A.
10.1101/2021.10.07.463279 — Posted: 2021-10-07 — Discussion: 2022-11-09  eLife
Lack of evidence for increased transcriptional noise in aged tissues
Ibanez-Sole, O., Ascension, A. M., Arauzo-Bravo, M. J., Izeta, A.
10.1101/2022.05.18.492432 — Posted: 2022-05-19 — Discussion: 2022-11-08  eLife

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