bioRxiv/medRxiv TRiP Review Activity

133 Reviews — eLife — Bioinformatics

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Rapid, Reference-Free Human Genotype Imputation with Denoising Autoencoders
Dias, R., Evans, D., Chen, S.-F., Chen, K.-Y., Chan, L., Torkamani, A.
10.1101/2021.12.01.470739 — Posted: 2021-12-02 — Discussion: 2022-02-16  eLife
Genetic, metabolic, and molecular insights into the diverse outcomes of diet-induced obesity in mice
Bachmann, A. M., Morel, J.-D. H., El Alam, G., Rodriguez-Lopez, S., de lima, T. I., Goeminne, L. J. E., Benegiamo, G., Bou Sleiman, M. S., Auwerx, J.
10.1101/2021.09.02.458729 — Posted: 2021-09-05 — Discussion: 2022-02-13  eLife
Discovering fragment length signatures of circulating tumor DNA using Non-negative Matrix Factorization
Renaud, G., Noergaard, M., Lindberg, J., Groenberg, H., De Laere, B., Jensen, J. B., Borre, M., Andersen, C. L., Soerensen, K. D., Maretty, L., Besenbacher, S.
10.1101/2021.06.09.447533 — Posted: 2021-06-10 — Discussion: 2022-02-11  eLife
Open Natural Products Research: Curation and Dissemination of Biological Occurrences of Chemical Structures through Wikidata
Rutz, A., Sorokina, M., Galgonek, J., Mietchen, D., Willighagen, E., Graham, J. G., Stephan, R., Page, R., Vondrasek, J., Steinbeck, C., Pauli, G., Wolfender, J.-L., Bisson, J., Allard, P.-M.
10.1101/2021.02.28.433265 — Posted: 2021-03-01 — Discussion: 2022-01-04  eLife
A survey of optimal strategy for signature-based drug repositioning and an application to liver cancer
Yang, C., Chen, M., Wang, S., Qian, R., Huang, X., Wang, J., Liu, Z., Qin, W.-X., Wang, C., Hang, H., Wang, H.
10.1101/2021.06.29.450305 — Posted: 2021-06-30 — Discussion: 2021-10-22  eLife
MCGA: a multi-strategy conditional gene-based association framework integrating with isoform-level expression profiles reveals new susceptible and druggable candidate genes of schizophrenia
Li, X., Jiang, L., Xue, C., Li, M. J., Li, M.
10.1101/2021.06.08.447608 — Posted: 2021-06-09 — Discussion: 2021-09-27  eLife
RNA splicing programs define tissue compartments and cell types at single cell resolution
Olivieri, J. E., Dehghannasiri, R., Wang, P., Jang, S., de Morree, A., Tan, S. Y., Ming, J., Wu, A. R., Tabula Sapiens Consortium, , Quake, S. R., Krasnow, M. A., Salzman, J.
10.1101/2021.05.01.442281 — Posted: 2021-05-02 — Discussion: 2021-09-03  eLife
Simplifying the development of portable, scalable, and reproducible workflows
Piccolo, S. R., Ence, Z. E., Anderson, E. C., Chang, J. T., Bild, A. H.
10.1101/2021.04.30.442204 — Posted: 2021-05-01 — Discussion: 2021-08-23  eLife
A universal, open-source, high-performance tool for automated sleep staging
Vallat, R., Walker, M. P.
10.1101/2021.05.28.446165 — Posted: 2021-05-28 — Discussion: 2021-08-20  eLife
PARROT: a flexible recurrent neural network framework for analysis of large protein datasets
Griffith, D., Holehouse, A. S.
10.1101/2021.05.21.445045 — Posted: 2021-05-23 — Discussion: 2021-08-06  eLife

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